Package: MethylSeekR 1.45.0

Lukas Burger

MethylSeekR: Segmentation of Bis-seq data

This is a package for the discovery of regulatory regions from Bis-seq data

Authors:Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

MethylSeekR_1.45.0.tar.gz
MethylSeekR_1.45.0.zip(r-4.5)MethylSeekR_1.45.0.zip(r-4.4)MethylSeekR_1.45.0.zip(r-4.3)
MethylSeekR_1.45.0.tgz(r-4.4-any)MethylSeekR_1.45.0.tgz(r-4.3-any)
MethylSeekR_1.45.0.tar.gz(r-4.5-noble)MethylSeekR_1.45.0.tar.gz(r-4.4-noble)
MethylSeekR_1.45.0.tgz(r-4.4-emscripten)MethylSeekR_1.45.0.tgz(r-4.3-emscripten)
MethylSeekR.pdf |MethylSeekR.html✨
MethylSeekR/json (API)

Peer review:

On BioConductor:MethylSeekR-1.45.0(bioc 3.20)MethylSeekR-1.44.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

11 exports 4.17 score 74 dependencies 33 mentions

Last updated 2 months agofrom:94e03713bc

Exports:calculateFDRsplotAlphaDistributionOneChrplotFinalSegmentationplotPMDSegmentationreadMethylomereadSNPTableremoveSNPssavePMDSegmentssaveUMRLMRSegmentssegmentPMDssegmentUMRsLMRs

Dependencies:abindannotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsgeneplotterGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemhsmmmimemvtnormopensslpkgconfigplogrpngR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsvctrsXMLxtableXVectoryamlzlibbioc