Package: Melissa 1.21.0
Melissa: Bayesian clustering and imputationa of single cell methylomes
Melissa is a Baysian probabilistic model for jointly clustering and imputing single cell methylomes. This is done by taking into account local correlations via a Generalised Linear Model approach and global similarities using a mixture modelling approach.
Authors:
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NEWS
# Install 'Melissa' in R: |
install.packages('Melissa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- melissa_encode_dt - Synthetic ENCODE single cell methylation data
- melissa_synth_dt - Synthetic single cell methylation data
On BioConductor:Melissa-1.21.0(bioc 3.20)Melissa-1.20.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:b2edeb79a4
Exports:binarise_filescreate_melissa_data_objeval_cluster_performanceeval_imputation_performancefilter_by_coverage_across_cellsfilter_by_cpg_coveragefilter_by_variabilityimpute_met_filesimpute_test_metmelissamelissa_gibbspartition_datasetplot_melissa_profiles
Dependencies:askpassassertthatbase64encBiocGenericsBiocManagerBiocStylebitopsbookdownBPRMethbslibcachemcaToolsclassclicodacodetoolscolorspacecowplotcurldata.tabledigestdoParallele1071earthevaluatefansifarverfastmapfontawesomeforeachFormulafsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegplotsgtablegtoolshighrhtmltoolshttrIRangesisobanditeratorsjquerylibjsonlitekernlabKernSmoothknitrlabelinglatticelifecyclemagrittrMASSMatrixmatrixcalcMatrixModelsmclustmcmcMCMCpackmemoisemgcvmimemunsellmvtnormnlmeopensslpillarpkgconfigplotmoplotrixproxyquantregR6randomForestrappdirsRColorBrewerRcppRcppArmadillorlangrmarkdownROCRS4VectorssassscalesSparseMsurvivalsystibbletinytextruncnormUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc