Package: Maaslin2 1.21.0
Lauren McIver
Maaslin2: "Multivariable Association Discovery in Population-scale Meta-omics Studies"
MaAsLin2 is comprehensive R package for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. MaAsLin2 relies on general linear models to accommodate most modern epidemiological study designs, including cross-sectional and longitudinal, and offers a variety of data exploration, normalization, and transformation methods. MaAsLin2 is the next generation of MaAsLin.
Authors:
Maaslin2_1.21.0.tar.gz
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Maaslin2.pdf |Maaslin2.html✨
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NEWS
| # Install 'Maaslin2' in R: |
| install.packages('Maaslin2', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biobakery/maaslin2/issues
On BioConductor:Maaslin2-1.21.0(bioc 3.21)Maaslin2-1.20.0(bioc 3.20)
metagenomicssoftwaremicrobiomenormalizationbiobakerybioconductordifferential-abundance-analysisfalse-discovery-ratemultiple-covariatespublicrepeated-measurestools
Last updated 2 months agofrom:3dacd30741. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 08 2024 |
| R-4.5-win | NOTE | Dec 08 2024 |
| R-4.5-linux | NOTE | Dec 08 2024 |
| R-4.4-win | NOTE | Dec 08 2024 |
| R-4.4-mac | NOTE | Dec 08 2024 |
| R-4.3-win | NOTE | Dec 08 2024 |
| R-4.3-mac | NOTE | Dec 08 2024 |
Exports:Maaslin2
Dependencies:abindbackportsbiglmBiobaseBiocGenericsbitopsbootbroomcarcarDatacaToolschemometricsclasscliclustercodacodetoolscolorspacecowplotcplmcpp11data.tableDBIDEoptimRDerivdoBydplyre1071edgeRfansifarverforeachFormulagenericsgetoptggplot2glmmTMBglmnetgluegplotsgtablegtoolshashisobanditeratorsKernSmoothlabelinglarslatticelifecyclelimmalme4lmerTestlocfitloggingmagrittrMASSMatrixMatrixModelsmatrixStatsmclustmetagenomeSeqmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivoptparsepbapplypbkrtestpcaPPpermutepheatmappillarpkgconfigplsplyrproxypsclpurrrquantregR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasreshape2rlangrobustbaserpartscalesshapesomSparseMstatmodstringistringrsurvivaltibbletidyrtidyselectTMBtweedieutf8vctrsveganviridisLitewithrWrench
