MaAsLin2 User Manual | Contents | Description | Requirements | Installation | From command line | From R | How to Run | Input Files | Output Files | Run a Demo | Command line | In R | Session Info | Options | Troubleshooting
Package: Maaslin2 1.27.0
Sagun Maharjan
Maaslin2: "Multivariable Association Discovery in Population-scale Meta-omics Studies"
MaAsLin2 is comprehensive R package for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. MaAsLin2 relies on general linear models to accommodate most modern epidemiological study designs, including cross-sectional and longitudinal, and offers a variety of data exploration, normalization, and transformation methods. MaAsLin2 is the next generation of MaAsLin.
Authors:
Maaslin2_1.27.0.tar.gz
Maaslin2_1.27.0.zip(r-4.7)Maaslin2_1.27.0.zip(r-4.6)Maaslin2_1.27.0.zip(r-4.5)
Maaslin2_1.27.0.tgz(r-4.6-any)Maaslin2_1.27.0.tgz(r-4.5-any)
Maaslin2_1.27.0.tar.gz(r-4.7-any)Maaslin2_1.27.0.tar.gz(r-4.6-any)
Maaslin2_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Maaslin2/json (API)
| # Install 'Maaslin2' in R: |
| install.packages('Maaslin2', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biobakery/maaslin2/issues
On BioConductor:Maaslin2-1.27.0(bioc 3.24)Maaslin2-1.26.0(bioc 3.23)
metagenomicssoftwaremicrobiomenormalizationbiobakerybioconductordifferential-abundance-analysisfalse-discovery-ratemultiple-covariatespublicr-toolsrepeated-measurestools
Last updated from:6335054294. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 182 | ||
| linux-devel-x86_64 | NOTE | 257 | ||
| source / vignettes | OK | 385 | ||
| linux-release-x86_64 | NOTE | 326 | ||
| macos-release-arm64 | NOTE | 144 | ||
| macos-oldrel-arm64 | NOTE | 157 | ||
| windows-devel | NOTE | 207 | ||
| windows-release | NOTE | 215 | ||
| windows-oldrel | NOTE | 212 | ||
| wasm-release | OK | 181 |
Exports:Maaslin2
Dependencies:abindbackportsbiglmBiobaseBiocGenericsbitopsbootbroomcarcarDatacaToolschemometricsclasscliclustercodacodetoolscolorspacecowplotcplmcpp11data.tableDBIDEoptimRDerivdoBydplyre1071edgeRfarverforeachforecastFormulafracdiffgenericsggplot2glmmTMBglmnetgluegplotsgtablegtoolshashisobanditeratorsKernSmoothlabelinglarslatticelifecyclelimmalme4lmerTestlmtestlocfitloggingmagrittrMASSMatrixMatrixModelsmatrixStatsmclustmetagenomeSeqmgcvminqamodelrmvtnormnlmenloptrnnetnumDerivoptparsepbapplypbkrtestpcaPPpermutepheatmappillarpkgconfigplsplyrproxypsclpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangrobustbaserpartS7sandwichscalesshapesomSparseMstatmodstringistringrsurvivaltibbletidyrtidyselecttimeDateTMBtweedieurcautf8vctrsveganviridisLitewithrWrenchzoo
