Package: Maaslin2 1.27.0

Sagun Maharjan

Maaslin2: "Multivariable Association Discovery in Population-scale Meta-omics Studies"

MaAsLin2 is comprehensive R package for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. MaAsLin2 relies on general linear models to accommodate most modern epidemiological study designs, including cross-sectional and longitudinal, and offers a variety of data exploration, normalization, and transformation methods. MaAsLin2 is the next generation of MaAsLin.

Authors:Himel Mallick [aut], Ali Rahnavard [aut], Thomas Kuntz [aut], Sagun Maharjan [aut, cre]

Maaslin2_1.27.0.tar.gz
Maaslin2_1.27.0.zip(r-4.7)Maaslin2_1.27.0.zip(r-4.6)Maaslin2_1.27.0.zip(r-4.5)
Maaslin2_1.27.0.tgz(r-4.6-any)Maaslin2_1.27.0.tgz(r-4.5-any)
Maaslin2_1.27.0.tar.gz(r-4.7-any)Maaslin2_1.27.0.tar.gz(r-4.6-any)
Maaslin2_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Maaslin2/json (API)
NEWS

# Install 'Maaslin2' in R:
install.packages('Maaslin2', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/biobakery/maaslin2/issues

On BioConductor:Maaslin2-1.27.0(bioc 3.24)Maaslin2-1.26.0(bioc 3.23)

metagenomicssoftwaremicrobiomenormalizationbiobakerybioconductordifferential-abundance-analysisfalse-discovery-ratemultiple-covariatespublicr-toolsrepeated-measurestools

11.27 score 155 stars 2 packages 764 scripts 1.7k downloads 8 mentions 1 exports 122 dependencies

Last updated from:6335054294. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING180
linux-devel-x86_64NOTE334
source / vignettesOK320
linux-release-x86_64NOTE279
macos-release-arm64NOTE150
macos-oldrel-arm64NOTE153
windows-develNOTE214
windows-releaseNOTE220
windows-oldrelNOTE208
wasm-releaseOK162

Exports:Maaslin2

Dependencies:abindbackportsbiglmBiobaseBiocGenericsbitopsbootbroomcarcarDatacaToolschemometricsclasscliclustercodacodetoolscolorspacecowplotcplmcpp11data.tableDBIDEoptimRDerivdoBydplyre1071edgeRfarverforeachforecastFormulafracdiffgenericsggplot2glmmTMBglmnetgluegplotsgtablegtoolshashisobanditeratorsKernSmoothlabelinglarslatticelifecyclelimmalme4lmerTestlmtestlocfitloggingmagrittrMASSMatrixMatrixModelsmatrixStatsmclustmetagenomeSeqmgcvmicrobenchmarkminqamodelrmvtnormnlmenloptrnnetnumDerivoptparsepbapplypbkrtestpcaPPpermutepheatmappillarpkgconfigplsplyrproxypsclpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangrobustbaserpartS7sandwichscalesshapesomSparseMstatmodstringistringrsurvivaltibbletidyrtidyselecttimeDateTMBtweedieurcautf8vctrsveganviridisLitewithrWrenchzoo

Maaslin2

Himel Mallick, Ali Rahnavard, Lauren McIver

Rendered frommaaslin2.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-06-07
Started: 2019-05-10