Package: MWASTools 1.37.0

Andrea Rodriguez-Martinez

MWASTools: MWASTools: an integrated pipeline to perform metabolome-wide association studies

MWASTools provides a complete pipeline to perform metabolome-wide association studies. Key functionalities of the package include: quality control analysis of metabonomic data; MWAS using different association models (partial correlations; generalized linear models); model validation using non-parametric bootstrapping; visualization of MWAS results; NMR metabolite identification using STOCSY; and biological interpretation of MWAS results.

Authors:Andrea Rodriguez-Martinez, Joram M. Posma, Rafael Ayala, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas

MWASTools_1.37.0.tar.gz
MWASTools_1.37.0.zip(r-4.7)MWASTools_1.37.0.zip(r-4.6)MWASTools_1.37.0.zip(r-4.5)
MWASTools_1.37.0.tgz(r-4.6-any)MWASTools_1.37.0.tgz(r-4.5-any)
MWASTools_1.37.0.tar.gz(r-4.7-any)MWASTools_1.37.0.tar.gz(r-4.6-any)
MWASTools_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MWASTools/json (API)
NEWS

# Install 'MWASTools' in R:
install.packages('MWASTools', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:MWASTools-1.37.0(bioc 3.24)MWASTools-1.36.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

metabolomicslipidomicscheminformaticssystemsbiologyqualitycontrol

3.78 score 1 packages 7 scripts 454 downloads 1 mentions 23 exports 119 dependencies

Last updated from:a673364d20. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR357
linux-devel-x86_64NOTE317
source / vignettesOK298
linux-release-x86_64NOTE362
macos-release-arm64NOTE216
macos-oldrel-arm64NOTE170
windows-develNOTE327
windows-releaseNOTE309
windows-oldrelNOTE265
wasm-releaseOK150

Exports:CV_filterJBA_binningJBA_corDistributionJBA_plotBinsMWAS_barplotMWAS_bootstrappingMWAS_filterMWAS_heatmapMWAS_KEGG_networkMWAS_KEGG_pathwaysMWAS_KEGG_shortestpathsMWAS_networkMWAS_scatterplotMSMWAS_skylineNMRMWAS_statsMWAS_SummarizedExperimentplot_spectraNMRQC_CVQC_CV_scatterplotQC_CV_specNMRQC_PCAQC_PCA_scoreplotSTOCSY_NMR

Dependencies:abindaskpassbackportsBiobaseBiocGenericsBiostringsbitopsbootbroomcarcarDatacirclizecliclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayoncurlDelayedArrayDerivdigestdoBydoParalleldplyrfarverforeachforecastFormulafracdiffgenericsGenomicRangesGetoptLongggplot2glm2GlobalOptionsgluegraphgridExtragtablehttrigraphIRangesisobanditeratorsjsonliteKEGGgraphKEGGRESTlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmgcvmicrobenchmarkmimeminqamodelrnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplyrpngppcorpurrrquantregqvalueR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRCurlRdpackreformulasreshape2RgraphvizrjsonrlangS4ArraysS4VectorsS7scalesSeqinfoshapeSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrXMLXVectorzoo

MWASTools

Rendered fromMWASTools.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2018-09-06
Started: 2016-11-28