Package: MSstatsLiP 1.11.0
MSstatsLiP: LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments
Tools for LiP peptide and protein significance analysis. Provides functions for summarization, estimation of LiP peptide abundance, and detection of changes across conditions. Utilizes functionality across the MSstats family of packages.
Authors:
MSstatsLiP_1.11.0.tar.gz
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MSstatsLiP.pdf |MSstatsLiP.html✨
MSstatsLiP/json (API)
# Install 'MSstatsLiP' in R: |
install.packages('MSstatsLiP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/vitek-lab/msstatslip/issues
- LiPRawData - LiPRawData
- MSstatsLiP_Summarized - MSstatsLiP_Summarized
- MSstatsLiP_data - MSstatsLiP_data
- MSstatsLiP_model - MSstatsLiP_model
- SkylineTest - SkylineTest
- TrPRawData - TrPRawData
- raw_lip - Raw_lip
- raw_prot - Raw_prot
On BioConductor:MSstatsLiP-1.11.0(bioc 3.20)MSstatsLiP-1.10.0(bioc 3.19)
Last updated 2 months agofrom:dda6d80c59
Exports:annotSitecalculateProteolyticResistancecalculateTrypticitycorrelationPlotLiPdataProcessPlotsLiPdataSummarizationLiPDIANNtoMSstatsLiPFormatgroupComparisonLiPgroupComparisonPlotsLiPlocateModlocatePTMPCAPlotLiPResistanceBarcodePlotLiPSkylinetoMSstatsLiPFormatSpectronauttoMSstatsLiPFormatStructuralBarcodePlotLiPtidyFastatrypticHistogramLiP
Dependencies:abindaskpassbackportsbase64encBiocGenericsBiostringsbitbit64bitopsblobbootbroombslibcachemcallrcarcarDatacaToolscellrangercheckmateclicliprclustercolorspaceconflictedcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDBIdbplyrdendextendDerivdigestdoBydplyrDTdtplyrellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustfontawesomeforcatsfsgarglegenericsGenomeInfoDbGenomeInfoDbDataggplot2ggpubrggrepelggsciggsignifgluegoogledrivegooglesheets4gplotsgridExtragtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvhttridsIRangesisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleapslifecyclelimmalme4lmerTestlog4rlubridatemagrittrmarrayMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrMSstatsMSstatsConvertMSstatsPTMMSstatsTMTmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplotlyplyrpolynompreprocessCoreprettyunitsprocessxprogresspromisespspurrrquantregR6raggrappdirsRColorBrewerRcppRcppArmadilloRcppEigenreadrreadxlrematchrematch2reprexreshape2rlangrmarkdownrstatixrstudioapirvestS4Vectorssassscalesscatterplot3dselectrSparseMstatmodstringistringrsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetinytextzdbUCSC.utilsutf8uuidvctrsviridisviridisLitevroomwithrxfunxml2XVectoryamlzlibbioc
Proteolytic resistance analysis
Rendered fromProteolytic_resistance_notebook.Rmd
usingknitr::rmarkdown
on Jun 30 2024.Last update: 2022-09-27
Started: 2022-04-18
MSstatsLiP Workflow: An example workflow and analysis of the MSstatsLiP package
Rendered fromMSstatsLiP_Workflow.Rmd
usingknitr::rmarkdown
on Jun 30 2024.Last update: 2022-09-27
Started: 2021-03-11