Package: MSstats 4.13.0
MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.
Authors:
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MSstats.pdf |MSstats.html✨
MSstats/json (API)
# Install 'MSstats' in R: |
install.packages('MSstats', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- DDARawData - Example dataset from a label-free DDA, a controlled spike-in experiment.
- DDARawData.Skyline - Example dataset from a label-free DDA, a controlled spike-in experiment, processed by Skyline.
- DIARawData - Example dataset from a label-free DIA, a group comparison study of S.Pyogenes.
- SRMRawData - Example dataset from a SRM experiment with stable isotope labeled reference of a time course yeast study
On BioConductor:MSstats-4.13.0(bioc 3.20)MSstats-4.12.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:1d9e1ed8a9
Exports:checkRepeatedDesigndataProcessdataProcessPlotsdesignSampleSizedesignSampleSizePlotsDIANNtoMSstatsFormatDIAUmpiretoMSstatsFormatextractSDRFFragPipetoMSstatsFormatgetProcessedgetSamplesInfogetSelectedProteinsgroupComparisongroupComparisonPlotsmakePeptidesDictionaryMaxQtoMSstatsFormatmodelBasedQCPlotsMSstatsContrastMatrixMSstatsGroupComparisonMSstatsGroupComparisonOutputMSstatsGroupComparisonSingleProteinMSstatsHandleMissingMSstatsMergeFractionsMSstatsNormalizeMSstatsPrepareForDataProcessMSstatsPrepareForGroupComparisonMSstatsPrepareForSummarizationMSstatsSelectFeaturesMSstatsSummarizationOutputMSstatsSummarizeMSstatsSummarizeSingleLinearMSstatsSummarizeSingleTMPOpenMStoMSstatsFormatOpenSWATHtoMSstatsFormatPDtoMSstatsFormatProgenesistoMSstatsFormatquantificationsavePlotSDRFtoAnnotationSkylinetoMSstatsFormatSpectronauttoMSstatsFormattheme_msstats
Dependencies:askpassbackportsbase64encbitopsbootbriobslibcachemcallrcaToolscheckmateclicolorspacecpp11crayoncrosstalkcurldata.tabledescdiffobjdigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2ggrepelgluegplotsgtablegtoolshighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelimmalme4log4rmagrittrmarrayMASSMatrixmemoisemgcvmimeminqaMSstatsConvertmunsellnlmenloptropensslpillarpkgbuildpkgconfigpkgloadplotlypraisepreprocessCoreprocessxpromisespspurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenrematch2rlangrmarkdownrprojrootsassscalesstatmodstringistringrsurvivalsystestthattibbletidyrtidyselecttinytexutf8vctrsviridisLitewaldowithrxfunyaml