Package: MSPrep 1.17.0

Max McGrath

MSPrep: Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data

Package performs summarization of replicates, filtering by frequency, several different options for imputing missing data, and a variety of options for transforming, batch correcting, and normalizing data.

Authors:Max McGrath [aut, cre], Matt Mulvahill [aut], Grant Hughes [aut], Sean Jacobson [aut], Harrison Pielke-lombardo [aut], Katerina Kechris [aut, cph, ths]

MSPrep_1.17.0.tar.gz
MSPrep_1.17.0.zip(r-4.5)MSPrep_1.17.0.zip(r-4.4)MSPrep_1.17.0.zip(r-4.3)
MSPrep_1.17.0.tgz(r-4.4-any)MSPrep_1.17.0.tgz(r-4.3-any)
MSPrep_1.17.0.tar.gz(r-4.5-noble)MSPrep_1.17.0.tar.gz(r-4.4-noble)
MSPrep_1.17.0.tgz(r-4.4-emscripten)MSPrep_1.17.0.tgz(r-4.3-emscripten)
MSPrep.pdf |MSPrep.html✨
MSPrep/json (API)
NEWS

# Install 'MSPrep' in R:
install.packages('MSPrep', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kechrislab/msprep/issues

Datasets:
  • COPD_131 - Example mass spectrometry dataset
  • msquant - Example mass spectrometry dataset.

On BioConductor:MSPrep-1.17.0(bioc 3.21)MSPrep-1.16.0(bioc 3.20)

metabolomicsmassspectrometrypreprocessing

5.20 score 10 stars 4 scripts 362 downloads 4 mentions 5 exports 138 dependencies

Last updated 2 months agofrom:5202f3a313. Checks:ERROR: 4 WARNING: 3. Indexed: yes.

TargetResultDate
Doc / VignettesFAILNov 30 2024
R-4.5-winWARNINGNov 30 2024
R-4.5-linuxERRORNov 30 2024
R-4.4-winWARNINGNov 30 2024
R-4.4-macERRORNov 30 2024
R-4.3-winWARNINGNov 30 2024
R-4.3-macERRORNov 30 2024

Exports:msFiltermsImputemsNormalizemsPreparemsSummarize

Dependencies:abindannotateAnnotationDbiaskpassbackportsBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobbootbroomcachemcarcarDataclassclicodetoolscolorspacecowplotcpp11crayoncrmncurldata.tableDBIDelayedArrayDEoptimRDerivdigestdoBydoRNGdplyre1071edgeRfansifarverfastmapforeachformatRFormulafutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobanditeratorsitertoolsjsonliteKEGGRESTlabelinglaekenlambda.rlatticelifecyclelimmalme4lmtestlocfitmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamissForestmodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpcaMethodspillarpkgconfigplogrpngpreprocessCoreproxypurrrquantregR6randomForestrangerRColorBrewerRcppRcppEigenrlangrngtoolsrobustbaseRSQLiteS4ArraysS4VectorsscalessnowspSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsvasystibbletidyrtidyselectUCSC.utilsutf8vcdvctrsVIMviridisLitewithrXMLxtableXVectorzlibbioczoo