Package: MSPrep 1.15.0

Max McGrath

MSPrep: Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data

Package performs summarization of replicates, filtering by frequency, several different options for imputing missing data, and a variety of options for transforming, batch correcting, and normalizing data.

Authors:Max McGrath [aut, cre], Matt Mulvahill [aut], Grant Hughes [aut], Sean Jacobson [aut], Harrison Pielke-lombardo [aut], Katerina Kechris [aut, cph, ths]

MSPrep_1.15.0.tar.gz
MSPrep_1.15.0.zip(r-4.5)MSPrep_1.15.0.zip(r-4.4)MSPrep_1.15.0.zip(r-4.3)
MSPrep_1.15.0.tgz(r-4.4-any)MSPrep_1.15.0.tgz(r-4.3-any)
MSPrep_1.15.0.tar.gz(r-4.5-noble)MSPrep_1.15.0.tar.gz(r-4.4-noble)
MSPrep_1.15.0.tgz(r-4.4-emscripten)MSPrep_1.15.0.tgz(r-4.3-emscripten)
MSPrep.pdf |MSPrep.html✨
MSPrep/json (API)
NEWS

# Install 'MSPrep' in R:

install.packages('MSPrep', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kechrislab/msprep/issues

Datasets:

COPD_131 - Example mass spectrometry dataset
msquant - Example mass spectrometry dataset.

On BioConductor:MSPrep-1.15.0(bioc 3.20)MSPrep-1.14.0(bioc 3.19)

bioconductor-package

5 exports 0.82 score 144 dependencies 4 mentions

Last updated 2 months agofrom:4263b68bbc

Exports:msFilter msImpute msNormalize msPrepare msSummarize

Dependencies:abind annotate AnnotationDbi askpass backports BH Biobase BiocGenerics BiocParallel Biostrings bit bit64 blob boot brio broom cachem callr car carData class cli codetools colorspace cpp11 crayon crmn curl data.table DBI DelayedArray DEoptimR desc diffobj digest doRNG dplyr e1071 edgeR evaluate fansi farver fastmap foreach formatR fs futile.logger futile.options genefilter generics GenomeInfoDb GenomeInfoDbData GenomicRanges glue httr IRanges iterators itertools jsonlite KEGGREST labeling laeken lambda.r lattice lifecycle limma lme4 lmtest locfit magrittr MASS Matrix MatrixGenerics MatrixModels matrixStats memoise mgcv mime minqa missForest munsell nlme nloptr nnet numDeriv openssl pbkrtest pcaMethods pillar pkgbuild pkgconfig pkgload plogr png praise preprocessCore processx proxy ps purrr quantreg R6 randomForest ranger RColorBrewer Rcpp RcppEigen rematch2 rlang rngtools robustbase rprojroot RSQLite S4Arrays S4Vectors scales snow sp SparseArray SparseM statmod stringi stringr SummarizedExperiment survival sva sys testthat tibble tidyr tidyselect UCSC.utils utf8 vcd vctrs VIM viridisLite waldo withr XML xtable XVector zlibbioc zoo

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Help page	Topics
Example mass spectrometry dataset	COPD_131
Function for filtering abundance data set.	msFilter
Function for imputing missing values in data.	msImpute
Function for performing normalization and batch corrections on imputed data.	msNormalize
Package for summarizing, filtering, imputing, and normalizing metabolomics data.	MSPrep
Summarize, filter, impute, transform and normalize metabolomics dataset	msPrepare
Example mass spectrometry dataset.	msquant
Function for summarizing technical replicates.	msSummarize

Package: MSPrep 1.15.0

MSPrep: Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data

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