Introduction | Requirements | Contents of the package | Processing of RNA-seq data | Marker search | MGFR algorithm details | Conclusion | R sessionInfo
Package: MGFR 1.39.0
Khadija El Amrani
MGFR: Marker Gene Finder in RNA-seq data
The package is designed to detect marker genes from RNA-seq data.
Authors:
MGFR_1.39.0.tar.gz
MGFR_1.39.0.zip(r-4.7)MGFR_1.39.0.zip(r-4.6)MGFR_1.39.0.zip(r-4.5)
MGFR_1.39.0.tgz(r-4.6-any)MGFR_1.39.0.tgz(r-4.5-any)
MGFR_1.39.0.tar.gz(r-4.7-any)MGFR_1.39.0.tar.gz(r-4.6-any)
MGFR_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MGFR/json (API)
| # Install 'MGFR' in R: |
| install.packages('MGFR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- ref.mat - RNA-seq gene expression data set
On BioConductor:MGFR-1.39.0(bioc 3.24)MGFR-1.38.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologygeneticsgeneexpressionrnaseq
Last updated from:234837449a. Checks:2 ERROR, 8 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 211 | ||
| linux-devel-x86_64 | OK | 262 | ||
| source / vignettes | OK | 231 | ||
| linux-release-x86_64 | OK | 264 | ||
| macos-release-arm64 | OK | 156 | ||
| macos-oldrel-arm64 | ERROR | 143 | ||
| windows-devel | OK | 169 | ||
| windows-release | OK | 178 | ||
| windows-oldrel | OK | 174 | ||
| wasm-release | OK | 115 |
Exports:getMarkerGenes.rnaseqgetMarkerGenes.rnaseq.html
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehmshttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2xtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Marker Gene Finder in RNA-seq data | MGFR-package MGFR |
| Marker Gene Detection | getMarkerGenes.rnaseq |
| Marker Gene Detection | getMarkerGenes.rnaseq.html |
| RNA-seq gene expression data set | ref.mat |