Introduction | Requirements | Contents of the package | Example data | Hierachical clustering | Normalization | Marker search | MGFM algorithm details | Conclusion | R sessionInfo
Package: MGFM 1.47.0
Khadija El Amrani
MGFM: Marker Gene Finder in Microarray gene expression data
The package is designed to detect marker genes from Microarray gene expression data sets
Authors:
MGFM_1.47.0.tar.gz
MGFM_1.47.0.zip(r-4.7)MGFM_1.47.0.zip(r-4.6)MGFM_1.47.0.zip(r-4.5)
MGFM_1.47.0.tgz(r-4.6-any)MGFM_1.47.0.tgz(r-4.5-any)
MGFM_1.47.0.tar.gz(r-4.7-any)MGFM_1.47.0.tar.gz(r-4.6-any)
MGFM_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MGFM/json (API)
| # Install 'MGFM' in R: |
| install.packages('MGFM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- ds2.mat - Microarray gene expression data set
On BioConductor:MGFM-1.47.0(bioc 3.24)MGFM-1.46.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneticsgeneexpressionmicroarray
Last updated from:2a91660252. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 189 | ||
| linux-devel-x86_64 | NOTE | 244 | ||
| source / vignettes | OK | 223 | ||
| linux-release-x86_64 | NOTE | 225 | ||
| macos-release-arm64 | NOTE | 128 | ||
| macos-oldrel-arm64 | NOTE | 130 | ||
| windows-devel | NOTE | 168 | ||
| windows-release | NOTE | 151 | ||
| windows-oldrel | NOTE | 170 | ||
| wasm-release | OK | 149 |
Exports:getHtmlpagegetMarkerGenes
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Marker Gene Finder in Microarray gene expression data | MGFM-package MGFM |
| Microarray gene expression data set | ds2.mat |
| Function to build HTML pages to show marker genes | getHtmlpage |
| Marker Gene Detection | getMarkerGenes |
