Package: MDTS 1.27.0

Jack M.. Fu

MDTS: Detection of de novo deletion in targeted sequencing trios

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Authors:Jack M.. Fu [aut, cre]

MDTS_1.27.0.tar.gz
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MDTS_1.27.0.tgz(r-4.4-any)MDTS_1.27.0.tgz(r-4.3-any)
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MDTS.pdf |MDTS.html
MDTS/json (API)

# Install 'MDTS' in R:
install.packages('MDTS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:MDTS-1.27.0(bioc 3.21)MDTS-1.26.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

statisticalmethodtechnologysequencingtargetedresequencingcoveragedataimport

2.78 score 1 scripts 188 downloads 3 mentions 8 exports 51 dependencies

Last updated 3 months agofrom:fe18875b17. Checks:1 ERROR, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesFAILDec 31 2024
R-4.5-winWARNINGDec 31 2024
R-4.5-linuxWARNINGDec 31 2024
R-4.4-winWARNINGDec 31 2024
R-4.4-macWARNINGDec 31 2024
R-4.3-winWARNINGDec 31 2024
R-4.3-macWARNINGDec 31 2024

Exports:calcBinscalcCountscalcMDdenovoDeletionsgetMetaDatanormalizeCountssegmentMDvisualizeDeletion

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlDelayedArrayDNAcopyformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslR6RhtslibrlangRsamtoolsS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsysUCSC.utilsvctrsXVector