Package: MDTS 1.27.0

Jack M.. Fu

MDTS: Detection of de novo deletion in targeted sequencing trios

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Authors:Jack M.. Fu [aut, cre]

MDTS_1.27.0.tar.gz
MDTS_1.27.0.zip(r-4.5)MDTS_1.27.0.zip(r-4.4)MDTS_1.27.0.zip(r-4.3)
MDTS_1.27.0.tgz(r-4.4-any)MDTS_1.27.0.tgz(r-4.3-any)
MDTS_1.27.0.tar.gz(r-4.5-noble)MDTS_1.27.0.tar.gz(r-4.4-noble)
MDTS_1.27.0.tgz(r-4.4-emscripten)MDTS_1.27.0.tgz(r-4.3-emscripten)
MDTS.pdf |MDTS.html✨
MDTS/json (API)

# Install 'MDTS' in R:
install.packages('MDTS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:MDTS-1.27.0(bioc 3.21)MDTS-1.26.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

statisticalmethodtechnologysequencingtargetedresequencingcoveragedataimport

2.78 score 1 scripts 182 downloads 3 mentions 8 exports 51 dependencies

Last updated 23 days agofrom:fe18875b17. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesFAILOct 31 2024
R-4.5-winWARNINGOct 31 2024
R-4.5-linuxWARNINGOct 31 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winWARNINGOct 31 2024
R-4.3-macWARNINGOct 31 2024

Exports:calcBinscalcCountscalcMDdenovoDeletionsgetMetaDatanormalizeCountssegmentMDvisualizeDeletion

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlDelayedArrayDNAcopyformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslR6RhtslibrlangRsamtoolsS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsysUCSC.utilsvctrsXVectorzlibbioc