Package: MDTS 1.25.0

Jack M.. Fu

MDTS: Detection of de novo deletion in targeted sequencing trios

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Authors:Jack M.. Fu [aut, cre]

MDTS_1.25.0.tar.gz
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MDTS_1.25.0.tgz(r-4.4-any)MDTS_1.25.0.tgz(r-4.3-any)
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MDTS.pdf |MDTS.html✨
MDTS/json (API)

# Install 'MDTS' in R:
install.packages('MDTS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:MDTS-1.25.0(bioc 3.20)MDTS-1.24.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

8 exports 1.45 score 51 dependencies 3 mentions

Last updated 2 months agofrom:1c2937e42e

Exports:calcBinscalcCountscalcMDdenovoDeletionsgetMetaDatanormalizeCountssegmentMDvisualizeDeletion

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayoncurlDelayedArrayDNAcopyformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehttrIRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslR6RhtslibrlangRsamtoolsS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsysUCSC.utilsvctrsXVectorzlibbioc