Package: MDTS 1.33.0

Jack M.. Fu

MDTS: Detection of de novo deletion in targeted sequencing trios

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Authors:Jack M.. Fu [aut, cre]

MDTS_1.33.0.tar.gz
MDTS_1.33.0.zip(r-4.7)MDTS_1.33.0.zip(r-4.6)MDTS_1.33.0.zip(r-4.5)
MDTS_1.33.0.tgz(r-4.6-any)MDTS_1.33.0.tgz(r-4.5-any)
MDTS_1.33.0.tar.gz(r-4.7-any)MDTS_1.33.0.tar.gz(r-4.6-any)
MDTS_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MDTS/json (API)

# Install 'MDTS' in R:
install.packages('MDTS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MDTS-1.33.0(bioc 3.24)MDTS-1.32.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

statisticalmethodtechnologysequencingtargetedresequencingcoveragedataimport

2.78 score 4 scripts 339 downloads 3 mentions 8 exports 42 dependencies

Last updated from:57ed97b82b. Checks:8 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING148
linux-devel-x86_64WARNING311
source / vignettesERROR230
linux-release-x86_64WARNING321
macos-release-arm64WARNING208
macos-oldrel-arm64WARNING186
windows-develWARNING241
windows-releaseWARNING194
windows-oldrelWARNING235
wasm-releaseOK124

Exports:calcBinscalcCountscalcMDdenovoDeletionsgetMetaDatanormalizeCountssegmentMDvisualizeDeletion

Dependencies:abindBHBiobaseBiocGenericsBiocParallelBiostringsbitopscigarilloclicodetoolscpp11crayonDelayedArrayDNAcopyformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesglueIRangeslambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsRhtslibrlangRsamtoolsS4ArraysS4VectorsSeqinfosnowSparseArraystringistringrSummarizedExperimentvctrsXVector