Package: MBASED 1.41.0
Oleg Mayba
MBASED: Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.
Authors:
MBASED_1.41.0.tar.gz
MBASED_1.41.0.zip(r-4.5)MBASED_1.41.0.zip(r-4.4)MBASED_1.41.0.zip(r-4.3)
MBASED_1.41.0.tgz(r-4.4-any)MBASED_1.41.0.tgz(r-4.3-any)
MBASED_1.41.0.tar.gz(r-4.5-noble)MBASED_1.41.0.tar.gz(r-4.4-noble)
MBASED_1.41.0.tgz(r-4.4-emscripten)MBASED_1.41.0.tgz(r-4.3-emscripten)
MBASED.pdf |MBASED.html✨
MBASED/json (API)
NEWS
# Install 'MBASED' in R: |
install.packages('MBASED', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MBASED-1.41.0(bioc 3.21)MBASED-1.40.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
sequencinggeneexpressiontranscription
Last updated 26 days agofrom:8637000694. Checks:OK: 1 NOTE: 3 WARNING: 3. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 31 2024 |
R-4.5-win | WARNING | Oct 31 2024 |
R-4.5-linux | NOTE | Oct 31 2024 |
R-4.4-win | WARNING | Oct 31 2024 |
R-4.4-mac | NOTE | Oct 31 2024 |
R-4.3-win | WARNING | Oct 31 2024 |
R-4.3-mac | NOTE | Oct 31 2024 |
Exports:runMBASED
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelcodetoolscpp11crayoncurlDelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RUnitS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsXVectorzlibbioc