Package: LoomExperiment 1.25.0
Bioconductor Package Maintainer
LoomExperiment: LoomExperiment container
The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.
Authors:
LoomExperiment_1.25.0.tar.gz
LoomExperiment_1.25.0.zip(r-4.5)LoomExperiment_1.25.0.zip(r-4.4)LoomExperiment_1.25.0.zip(r-4.3)
LoomExperiment_1.25.0.tgz(r-4.4-any)LoomExperiment_1.25.0.tgz(r-4.3-any)
LoomExperiment_1.25.0.tar.gz(r-4.5-noble)LoomExperiment_1.25.0.tar.gz(r-4.4-noble)
LoomExperiment_1.25.0.tgz(r-4.4-emscripten)LoomExperiment_1.25.0.tgz(r-4.3-emscripten)
LoomExperiment.pdf |LoomExperiment.html✨
LoomExperiment/json (API)
NEWS
| # Install 'LoomExperiment' in R: |
| install.packages('LoomExperiment', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:LoomExperiment-1.23.0(bioc 3.20)LoomExperiment-1.22.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologydatarepresentationdataimportinfrastructuresinglecell
Last updated 23 days agofrom:0f3982f19e. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 30 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | NOTE | Oct 31 2024 |
| R-4.3-mac | NOTE | Oct 31 2024 |
Exports:cbindcolGraphscolGraphs<-exportimportLoomExperimentLoomFileLoomGraphLoomGraphsRangedLoomExperimentrbindrowGraphsrowGraphs<-showSingleCellLoomExperiment
Dependencies:abindaskpassBiobaseBiocGenericsBiocIOclicrayoncurlDelayedArrayGenomeInfoDbGenomeInfoDbDataGenomicRangesglueHDF5ArrayhttrIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslR6rhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSingleCellExperimentSparseArraystringistringrSummarizedExperimentsysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Export LoomExperiment to LoomFile | export export,LoomExperiment,LoomFile,ANY-method export-methods |
| Import LoomExperiment from LoomFile | import import,LoomFile,ANY,ANY-method import-methods |
| L1_DRG_20_example.loom | L1_DRG_20_example L1_DRG_20_example.loom |
| LoomExperiment, RangedLoomExperiment, and SingleCellLoomExperiment classes | cbind,LoomExperiment-method cbind,SingleCellLoomExperiment-method colGraphs colGraphs,LoomExperiment-method colGraphs<- colGraphs<-,LoomExperiment-method LoomExperiment LoomExperiment-class RangedLoomExperiment RangedLoomExperiment-class rbind,LoomExperiment-method rbind,SingleCellLoomExperiment-method rowGraphs rowGraphs,LoomExperiment-method rowGraphs<- rowGraphs<-,LoomExperiment-method show,LoomExperiment-method show,RangedLoomExperiment-method show,SingleCellLoomExperiment-method SingleCellLoomExperiment SingleCellLoomExperiment-class [,LoomExperiment,ANY,ANY,ANY-method [,LoomExperiment,ANY-method [,LoomExperiment-method [,RangedLoomExperiment,ANY,ANY,ANY-method [,RangedLoomExperiment,ANY-method [,RangedLoomExperiment-method [,SingleCellLoomExperiment,ANY,ANY,ANY-method [,SingleCellLoomExperiment,ANY-method [,SingleCellLoomExperiment-method |
| LoomFile objects | LoomFile LoomFile-class |
| LoomGraph class | cbind,LoomGraph-method LoomGraph LoomGraph-class rbind,LoomGraph-method |
| LoomGraphs class | cbind,LoomGraphs-method LoomGraphs LoomGraphs-class rbind,LoomGraphs-method |
