The LoomExperiment class | Definition | Create instances of LoomExperiment | Setting up a simple example | The LoomGraph class | The LoomGraphs class | Available methods for the LoomExperiment | Session Info
Package: LoomExperiment 1.31.0
Bioconductor Package Maintainer
LoomExperiment: LoomExperiment container
The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.
Authors:
LoomExperiment_1.31.0.tar.gz
LoomExperiment_1.31.0.zip(r-4.7)LoomExperiment_1.31.0.zip(r-4.6)LoomExperiment_1.31.0.zip(r-4.5)
LoomExperiment_1.31.0.tgz(r-4.6-any)LoomExperiment_1.31.0.tgz(r-4.5-any)
LoomExperiment_1.31.0.tar.gz(r-4.7-any)LoomExperiment_1.31.0.tar.gz(r-4.6-any)
LoomExperiment_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
LoomExperiment/json (API)
| # Install 'LoomExperiment' in R: |
| install.packages('LoomExperiment', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:LoomExperiment-1.31.0(bioc 3.24)LoomExperiment-1.30.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologydatarepresentationdataimportinfrastructuresinglecell
Last updated from:e8cec73a7e. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 193 | ||
| linux-devel-x86_64 | NOTE | 355 | ||
| source / vignettes | OK | 264 | ||
| linux-release-x86_64 | NOTE | 307 | ||
| macos-release-arm64 | NOTE | 197 | ||
| macos-oldrel-arm64 | NOTE | 232 | ||
| windows-devel | NOTE | 288 | ||
| windows-release | NOTE | 259 | ||
| windows-oldrel | NOTE | 253 | ||
| wasm-release | OK | 148 |
Exports:cbindcolGraphscolGraphs<-exportimportLoomExperimentLoomFileLoomGraphLoomGraphsRangedLoomExperimentrbindrowGraphsrowGraphs<-showSingleCellLoomExperiment
Dependencies:abindBiobaseBiocBaseUtilsBiocGenericsBiocIObiocmakecliDelayedArraydir.expiryfilelockgenericsGenomicRangesglueh5mreadHDF5ArrayIRangeslatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsrhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraystringistringrSummarizedExperimentvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Export LoomExperiment to LoomFile | export export,LoomExperiment,LoomFile,ANY-method export-methods |
| Import LoomExperiment from LoomFile | import import,LoomFile,ANY,ANY-method import-methods |
| L1_DRG_20_example.loom | L1_DRG_20_example L1_DRG_20_example.loom |
| LoomExperiment, RangedLoomExperiment, and SingleCellLoomExperiment classes | cbind,LoomExperiment-method cbind,SingleCellLoomExperiment-method colGraphs colGraphs,LoomExperiment-method colGraphs<- colGraphs<-,LoomExperiment-method LoomExperiment LoomExperiment-class RangedLoomExperiment RangedLoomExperiment-class rbind,LoomExperiment-method rbind,SingleCellLoomExperiment-method rowGraphs rowGraphs,LoomExperiment-method rowGraphs<- rowGraphs<-,LoomExperiment-method show,LoomExperiment-method show,RangedLoomExperiment-method show,SingleCellLoomExperiment-method SingleCellLoomExperiment SingleCellLoomExperiment-class [,LoomExperiment,ANY,ANY,ANY-method [,LoomExperiment,ANY-method [,LoomExperiment-method [,RangedLoomExperiment,ANY,ANY,ANY-method [,RangedLoomExperiment,ANY-method [,RangedLoomExperiment-method [,SingleCellLoomExperiment,ANY,ANY,ANY-method [,SingleCellLoomExperiment,ANY-method [,SingleCellLoomExperiment-method |
| LoomFile objects | LoomFile LoomFile-class |
| LoomGraph class | cbind,LoomGraph-method LoomGraph LoomGraph-class rbind,LoomGraph-method |
| LoomGraphs class | cbind,LoomGraphs-method LoomGraphs LoomGraphs-class rbind,LoomGraphs-method |
