Package: LoomExperiment 1.31.0

Bioconductor Package Maintainer

LoomExperiment: LoomExperiment container

The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.

Authors:Martin Morgan, Daniel Van Twisk

LoomExperiment_1.31.0.tar.gz
LoomExperiment_1.31.0.zip(r-4.7-any)LoomExperiment_1.31.0.zip(r-4.6-any)LoomExperiment_1.31.0.zip(r-4.5-any)
LoomExperiment_1.31.0.tgz(r-4.6-any)LoomExperiment_1.31.0.tgz(r-4.5-any)
LoomExperiment_1.31.0.tar.gz(r-4.7-any)LoomExperiment_1.31.0.tar.gz(r-4.6-any)
LoomExperiment_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
LoomExperiment/json (API)

# Install 'LoomExperiment' in R:
install.packages('LoomExperiment', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:LoomExperiment-1.31.0(bioc 3.24)LoomExperiment-1.30.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologydatarepresentationdataimportinfrastructuresinglecell

3.26 score 89 scripts 1.0k downloads 1 mentions 15 exports 36 dependencies

Last updated from:e8cec73a7e. Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR172
linux-develWARNING526
source / vignettesERROR344
linux-releaseWARNING512
macos-releaseWARNING209
macos-oldrelWARNING208
windows-develWARNING255
windows-releaseWARNING295
windows-oldrelWARNING300
wasm-releaseOK136

Exports:cbindcolGraphscolGraphs<-exportimportLoomExperimentLoomFileLoomGraphLoomGraphsRangedLoomExperimentrbindrowGraphsrowGraphs<-showSingleCellLoomExperiment

Dependencies:abindBiobaseBiocBaseUtilsBiocGenericsBiocIObiocmakecliDelayedArraydir.expiryfilelockgenericsGenomicRangesglueh5mreadHDF5ArrayIRangeslatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsrhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraystringistringrSummarizedExperimentvctrsXVector

Readme and manuals

Help Manual

Help pageTopics
Export LoomExperiment to LoomFileexport export,LoomExperiment,LoomFile,ANY-method export-methods
Import LoomExperiment from LoomFileimport import,LoomFile,ANY,ANY-method import-methods
L1_DRG_20_example.loomL1_DRG_20_example L1_DRG_20_example.loom
LoomExperiment, RangedLoomExperiment, and SingleCellLoomExperiment classescbind,LoomExperiment-method cbind,SingleCellLoomExperiment-method colGraphs colGraphs,LoomExperiment-method colGraphs<- colGraphs<-,LoomExperiment-method LoomExperiment LoomExperiment-class RangedLoomExperiment RangedLoomExperiment-class rbind,LoomExperiment-method rbind,SingleCellLoomExperiment-method rowGraphs rowGraphs,LoomExperiment-method rowGraphs<- rowGraphs<-,LoomExperiment-method show,LoomExperiment-method show,RangedLoomExperiment-method show,SingleCellLoomExperiment-method SingleCellLoomExperiment SingleCellLoomExperiment-class [,LoomExperiment,ANY,ANY,ANY-method [,LoomExperiment,ANY-method [,LoomExperiment-method [,RangedLoomExperiment,ANY,ANY,ANY-method [,RangedLoomExperiment,ANY-method [,RangedLoomExperiment-method [,SingleCellLoomExperiment,ANY,ANY,ANY-method [,SingleCellLoomExperiment,ANY-method [,SingleCellLoomExperiment-method
LoomFile objectsLoomFile LoomFile-class
LoomGraph classcbind,LoomGraph-method LoomGraph LoomGraph-class rbind,LoomGraph-method
LoomGraphs classcbind,LoomGraphs-method LoomGraphs LoomGraphs-class rbind,LoomGraphs-method