Package: LinkHD 1.19.0
"Laura M Zingaretti"
LinkHD: LinkHD: a versatile framework to explore and integrate heterogeneous data
Here we present Link-HD, an approach to integrate heterogeneous datasets, as a generalization of STATIS-ACT (“Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux”), a family of methods to join and compare information from multiple subspaces. However, STATIS-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection.
Authors:
LinkHD_1.19.0.tar.gz
LinkHD_1.19.0.zip(r-4.5)LinkHD_1.19.0.zip(r-4.4)LinkHD_1.19.0.zip(r-4.3)
LinkHD_1.19.0.tgz(r-4.4-any)LinkHD_1.19.0.tgz(r-4.3-any)
LinkHD_1.19.0.tar.gz(r-4.5-noble)LinkHD_1.19.0.tar.gz(r-4.4-noble)
LinkHD_1.19.0.tgz(r-4.4-emscripten)LinkHD_1.19.0.tgz(r-4.3-emscripten)
LinkHD.pdf |LinkHD.html✨
LinkHD/json (API)
| # Install 'LinkHD' in R: |
| install.packages('LinkHD', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Ruminotypes - Whole Ruminotypes dataset communities
- Taraoceans - TARA Oceans datasets
On BioConductor:LinkHD-1.19.0(bioc 3.20)LinkHD-1.18.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:23dd505e89
Exports:compromise_coordsCompromise_matrixCompromisePlotcorrelCorrelationPlotdABDataProcessingEuclid_ImGlobalPlotInertia_compInertia_RVLinkDataOTU2TaxaRead_DataRQOsign_valuesTrajectoriesVar_coordinatesVariablesVarSelectionVarTable
Dependencies:abindaskpassbackportsBiobaseBiocBaseUtilsBiocGenericsbitbit64bootbroomcarcarDatacellrangerclicliprclustercolorspacecorrplotcowplotcpp11crayoncurldata.tableDelayedArrayDerivdoBydplyremmeansestimabilityfansifarverforcatsforeigngenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehavenhmshttrIRangesisobandjsonlitelabelinglatticelifecyclelme4magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmgcvmicrobenchmarkmimeminqamodelrMultiAssayExperimentmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpermutepillarpkgconfigplyrpolynomprettyunitsprogresspurrrquantregR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppEigenreadrreadxlrematchreshape2riorlangrstatixS4ArraysS4VectorsscalesSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8vctrsveganviridisLitevroomwithrwritexlXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| compromise_coords | compromise_coords compromise_coords,DistStatis-method |
| Compromise_matrix | Compromise_matrix Compromise_matrix,DistStatis-method |
| Compromise-Plot | CompromisePlot CompromisePlot,DistStatis-method |
| correl | correl correl,DistStatis-method |
| Correlation-Plot | CorrelationPlot CorrelationPlot,DistStatis-method |
| dAB | dAB |
| DataProcessing | DataProcessing |
| Class 'DistStatis' DistStatis S4 class (linkHD:Multiple Heterogeneous Dataset Integration) Statis with Distance options implementation. | DistStatis-class |
| Euclid_Im | Euclid_Im Euclid_Im,DistStatis-method |
| Global-Plot | GlobalPlot GlobalPlot,DistStatis-method |
| Inertia_comp | Inertia_comp Inertia_comp,DistStatis-method |
| Inertia_RV | Inertia_RV Inertia_RV,DistStatis-method |
| LinkData: multiple heterogeneous dataset integration | LinkData |
| OTU2Taxa | OTU2Taxa |
| Read_Data: a fast way to data reading. | Read_Data |
| RQO | RQO RQO,DistStatis-method |
| Whole Ruminotypes dataset communities | Ruminotypes |
| sign_values | sign_values sign_values,VarSelection-method |
| TARA Oceans datasets | Taraoceans |
| Trajectories | Trajectories Trajectories,DistStatis-method |
| Var_coordinates | Var_coordinates Var_coordinates,VarSelection-method |
| Variables | Variables Variables,VarSelection-method |
| Variable Selection | VarSelection |
| class VarSelection | VarSelection-class |
| VarTable | VarTable VarTable,VarSelection-method |
