Package: LOLA 1.35.0
LOLA: Locus overlap analysis for enrichment of genomic ranges
Provides functions for testing overlap of sets of genomic regions with public and custom region set (genomic ranges) databases. This makes it possible to do automated enrichment analysis for genomic region sets, thus facilitating interpretation of functional genomics and epigenomics data.
Authors:
LOLA_1.35.0.tar.gz
LOLA_1.35.0.zip(r-4.5)LOLA_1.35.0.zip(r-4.4)LOLA_1.35.0.zip(r-4.3)
LOLA_1.35.0.tgz(r-4.4-any)LOLA_1.35.0.tgz(r-4.3-any)
LOLA_1.35.0.tar.gz(r-4.5-noble)LOLA_1.35.0.tar.gz(r-4.4-noble)
LOLA_1.35.0.tgz(r-4.4-emscripten)LOLA_1.35.0.tgz(r-4.3-emscripten)
LOLA.pdf |LOLA.html✨
LOLA/json (API)
NEWS
# Install 'LOLA' in R: |
install.packages('LOLA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nsheff/lola/issues
- userSets - An example set of regions, sampled from the example database.
- userUniverse - A reduced GRanges object from the example regionDB database
On BioConductor:LOLA-1.35.0(bioc 3.20)LOLA-1.34.0(bioc 3.19)
Last updated 2 months agofrom:f821fd8ae9
Exports:buildRestrictedUniversecheckUniverseAppropriatenessextractEnrichmentOverlapsgetRegionFilegetRegionSetlistRegionSetsloadRegionDBmergeRegionDBsplotTopLOLAEnrichmentsreadBedreadCollectionreadCollectionAnnotationreadCollectionFilesreadRegionGRLreadRegionSetAnnotationredefineUserSetsrunLOLAsetSharedDataDirsplitFileIntoCollectionwriteCombinedEnrichment
Dependencies:askpassBiocGenericsclicurldata.tableGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelifecyclemagrittrmimeopensslplyrR6Rcppreshape2rlangS4VectorsstringistringrsysUCSC.utilsvctrsXVectorzlibbioc
Getting Started with LOLA
Rendered fromgettingStarted.Rmd
usingknitr::rmarkdown
on Jun 17 2024.Last update: 2019-06-14
Started: 2015-04-09
Using LOLA Core
Rendered fromusingLOLACore.Rmd
usingknitr::rmarkdown
on Jun 17 2024.Last update: 2018-02-06
Started: 2015-04-16
Choosing a LOLA Universe
Rendered fromchoosingUniverse.Rmd
usingknitr::rmarkdown
on Jun 17 2024.Last update: 2018-02-06
Started: 2015-04-20