Package: IsoCorrectoR 1.25.0

Christian Kohler

IsoCorrectoR: Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments

IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as ultra-high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously). See the Bioconductor package IsoCorrectoRGUI for a graphical user interface to IsoCorrectoR. NOTE: With R version 4.0.0, writing correction results to Excel files may currently not work on Windows. However, writing results to csv works as before.

Authors:Christian Kohler [cre, aut], Paul Heinrich [aut]

IsoCorrectoR_1.25.0.tar.gz
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IsoCorrectoR.pdf |IsoCorrectoR.html
IsoCorrectoR/json (API)
NEWS

# Install 'IsoCorrectoR' in R:
install.packages('IsoCorrectoR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:IsoCorrectoR-1.23.0(bioc 3.20)IsoCorrectoR-1.22.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwaremetabolomicsmassspectrometrypreprocessingimmunooncology

4.56 score 1 packages 7 scripts 188 downloads 6 mentions 1 exports 35 dependencies

Last updated 23 days agofrom:b3c775a21e. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macNOTEOct 30 2024
R-4.3-winNOTEOct 30 2024
R-4.3-macNOTEOct 30 2024

Exports:IsoCorrection

Dependencies:bitbit64cellrangerclicliprcpp11crayondplyrfansigenericsgluehmslifecyclemagrittrpillarpkgconfigpracmaprettyunitsprogressquadprogR6readrreadxlrematchrlangstringistringrtibbletidyselecttzdbutf8vctrsvroomwithrWriteXLS

Introduction to IsoCorrectoR

Rendered fromIsoCorrectoR.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2019-05-20
Started: 2018-07-12