Why perform correction for natural stable isotope abundance and tracer purity? | What is IsoCorrectoR? | IsoCorrectoR packages: IsoCorrectoR and IsoCorrectoRGUI | Installing IsoCorrectoR | Requirements | General (IsoCorrectoR and IsoCorrectoRGUI) | Graphical user interface version only (IsoCorrectoRGUI) | Installation | How to use IsoCorrectoR | Using IsoCorrectoR via the graphical user interface (IsoCorrectoRGUI package) | Parameters that can be set in the graphical user interface: | Using IsoCorrectoR via the R console (IsoCorrectoR and IsoCorrectoRGUI package) | Function call: | Basic arguments: | Advanced arguments (usually need not be changed): | Returned value | Result files produced by IsoCorrectoR | Starting IsoCorrectoR GUI directly under Windows (IsoCorrectoRGUI package) | Input files and parameters | Input files | Molecule information file | Example for molecule information file structure | Measurement file | Example for measurement file structure | Handling of missing values in the measurement file | Element information file | Example for element information file structure | Basic correction parameters | Tracer purity correction | Correction of tracer element natural abundance in the core molecule | Normal/High resolution correction | Advanced correction parameters | Correction results for monoisotopic species | Calculation thresholds | SessionInfo | References
Package: IsoCorrectoR 1.31.0
Christian Kohler
IsoCorrectoR: Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments
IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as ultra-high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously). See the Bioconductor package IsoCorrectoRGUI for a graphical user interface to IsoCorrectoR. NOTE: With R version 4.0.0, writing correction results to Excel files may currently not work on Windows. However, writing results to csv works as before.
Authors:
IsoCorrectoR_1.31.0.tar.gz
IsoCorrectoR_1.31.0.zip(r-4.7)IsoCorrectoR_1.31.0.zip(r-4.6)IsoCorrectoR_1.31.0.zip(r-4.5)
IsoCorrectoR_1.31.0.tgz(r-4.6-any)IsoCorrectoR_1.31.0.tgz(r-4.5-any)
IsoCorrectoR_1.31.0.tar.gz(r-4.7-any)IsoCorrectoR_1.31.0.tar.gz(r-4.6-any)
IsoCorrectoR_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
IsoCorrectoR/json (API)
| # Install 'IsoCorrectoR' in R: |
| install.packages('IsoCorrectoR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- IsoCorrectoR - IsoCorrectoR example data
On BioConductor:IsoCorrectoR-1.31.0(bioc 3.24)IsoCorrectoR-1.30.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwaremetabolomicsmassspectrometrypreprocessingimmunooncology
Last updated from:603255fdf6. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 161 | ||
| linux-devel-x86_64 | NOTE | 209 | ||
| source / vignettes | OK | 210 | ||
| linux-release-x86_64 | NOTE | 255 | ||
| macos-release-arm64 | NOTE | 172 | ||
| macos-oldrel-arm64 | NOTE | 89 | ||
| windows-devel | NOTE | 132 | ||
| windows-release | NOTE | 165 | ||
| windows-oldrel | NOTE | 129 | ||
| wasm-release | OK | 127 |
Exports:IsoCorrection
Dependencies:bitbit64cellrangerclicliprcpp11crayondplyrgenericsgluehmslifecyclemagrittrpillarpkgconfigpracmaprettyunitsprogressquadprogR6readrreadxlrematchrlangstringistringrtibbletidyselecttzdbutf8vctrsvroomwithrWriteXLS
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Algorithm For Natural Isotope Abundance And Tracer Purity Correction Of Data From Stable Isotope Labeling Experiments | IsoCorrection |
| IsoCorrectoR example data | IsoCorrectoR |
