Package: IntramiRExploreR 1.27.0

Surajit Bhattacharya

IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Authors:Surajit Bhattacharya and Daniel Cox

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Bug tracker:https://github.com/vilainlab/intramirexplorer/issues

On BioConductor:IntramiRExploreR-1.27.0(bioc 3.20)IntramiRExploreR-1.26.0(bioc 3.19)

bioconductor-package

7 exports 0.82 score 30 dependencies

Last updated 2 months agofrom:ac65c7ce82

Exports:extract_HostGeneextract_intragenic_miRGene_Visualisationgenes_StatGetGOS_ALLmiRTargets_StatVisualisation

Dependencies:clicpp11evaluateFGNetgluehighrhwriterigraphknitrlatticelifecyclemagrittrMatrixpkgconfigplotrixplyrpngR.methodsS3R.ooR.utilsRColorBrewerRcppreshape2rlangstringistringrvctrsxfunXMLyaml