Package: IntramiRExploreR 1.29.0
Surajit Bhattacharya
IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs
Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
Authors:
IntramiRExploreR_1.29.0.tar.gz
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IntramiRExploreR.pdf |IntramiRExploreR.html✨
IntramiRExploreR/json (API)
| # Install 'IntramiRExploreR' in R: |
| install.packages('IntramiRExploreR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/vilainlab/intramirexplorer/issues
- Affy1_Distance_Final - Targets for the microRNA analyzed from Affy1 plaform using Distance.
- Affy1_Pearson_Final - Targets for the microRNA analyzed from Affy1 plaform using Pearson.
- Affy2_Distance_Final - Targets for the microRNA analyzed from Affy2 plaform using Distance.
- Affy2_Pearson_Final - Targets for the microRNA analyzed from Affy2 plaform using Pearson.
- miRNA_ID_to_Function - Contains the miRNA function information from Flybase database.
- miRNA_summary_DB - Contains the summary for the intragenic miRNA.
On BioConductor:IntramiRExploreR-1.29.0(bioc 3.21)IntramiRExploreR-1.28.0(bioc 3.20)
softwaremicroarraygenetargetstatisticalmethodgeneexpressiongeneprediction
Last updated 2 months agofrom:a02de9921a. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 19 2024 |
| R-4.5-win | WARNING | Dec 19 2024 |
| R-4.5-linux | WARNING | Dec 19 2024 |
| R-4.4-win | WARNING | Dec 19 2024 |
| R-4.4-mac | WARNING | Dec 19 2024 |
| R-4.3-win | WARNING | Dec 19 2024 |
| R-4.3-mac | WARNING | Dec 19 2024 |
Exports:extract_HostGeneextract_intragenic_miRGene_Visualisationgenes_StatGetGOS_ALLmiRTargets_StatVisualisation
Dependencies:clicpp11evaluateFGNetgluehighrhwriterigraphknitrlatticelifecyclemagrittrMatrixpkgconfigplotrixplyrpngR.methodsS3R.ooR.utilsRColorBrewerRcppreshape2rlangstringistringrvctrsxfunXMLyaml
