Package: IntramiRExploreR 1.29.0

Surajit Bhattacharya

IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Authors:Surajit Bhattacharya and Daniel Cox

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IntramiRExploreR.pdf |IntramiRExploreR.html✨
IntramiRExploreR/json (API)

# Install 'IntramiRExploreR' in R:
install.packages('IntramiRExploreR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/vilainlab/intramirexplorer/issues

Datasets:

On BioConductor:IntramiRExploreR-1.29.0(bioc 3.21)IntramiRExploreR-1.28.0(bioc 3.20)

softwaremicroarraygenetargetstatisticalmethodgeneexpressiongeneprediction

4.60 score 4 scripts 182 downloads 7 exports 30 dependencies

Last updated 25 days agofrom:a02de9921a. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winWARNINGNov 19 2024
R-4.5-linuxWARNINGNov 19 2024
R-4.4-winWARNINGNov 19 2024
R-4.4-macWARNINGNov 19 2024
R-4.3-winWARNINGNov 19 2024
R-4.3-macWARNINGNov 19 2024

Exports:extract_HostGeneextract_intragenic_miRGene_Visualisationgenes_StatGetGOS_ALLmiRTargets_StatVisualisation

Dependencies:clicpp11evaluateFGNetgluehighrhwriterigraphknitrlatticelifecyclemagrittrMatrixpkgconfigplotrixplyrpngR.methodsS3R.ooR.utilsRColorBrewerRcppreshape2rlangstringistringrvctrsxfunXMLyaml

IntramiRExploreR_Vignettes_ver05

Surajit Bhattacharyal and Daniel N. Cox

Rendered fromIntramiRExploreR_vignettes.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2021-08-20
Started: 2017-03-31