Package: IntramiRExploreR 1.35.0
Surajit Bhattacharya
IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs
Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
Authors:
IntramiRExploreR_1.35.0.tar.gz
IntramiRExploreR_1.35.0.zip(r-4.7)IntramiRExploreR_1.35.0.zip(r-4.6)IntramiRExploreR_1.35.0.zip(r-4.5)
IntramiRExploreR_1.35.0.tgz(r-4.6-any)IntramiRExploreR_1.35.0.tgz(r-4.5-any)
IntramiRExploreR_1.35.0.tar.gz(r-4.7-any)IntramiRExploreR_1.35.0.tar.gz(r-4.6-any)
IntramiRExploreR_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
IntramiRExploreR/json (API)
| # Install 'IntramiRExploreR' in R: |
| install.packages('IntramiRExploreR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/vilainlab/intramirexplorer/issues
Datasets:
- Affy1_Distance_Final - Targets for the microRNA analyzed from Affy1 plaform using Distance.
- Affy1_Pearson_Final - Targets for the microRNA analyzed from Affy1 plaform using Pearson.
- Affy2_Distance_Final - Targets for the microRNA analyzed from Affy2 plaform using Distance.
- Affy2_Pearson_Final - Targets for the microRNA analyzed from Affy2 plaform using Pearson.
- miRNA_ID_to_Function - Contains the miRNA function information from Flybase database.
- miRNA_summary_DB - Contains the summary for the intragenic miRNA.
On BioConductor:IntramiRExploreR-1.35.0(bioc 3.24)IntramiRExploreR-1.34.0(bioc 3.23)
softwaremicroarraygenetargetstatisticalmethodgeneexpressiongeneprediction
Last updated from:2400d90668. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 194 | ||
| linux-devel-x86_64 | WARNING | 255 | ||
| source / vignettes | OK | 424 | ||
| linux-release-x86_64 | WARNING | 223 | ||
| macos-release-arm64 | WARNING | 102 | ||
| macos-oldrel-arm64 | WARNING | 143 | ||
| windows-devel | WARNING | 130 | ||
| windows-release | WARNING | 128 | ||
| windows-oldrel | WARNING | 122 | ||
| wasm-release | OK | 167 |
Exports:extract_HostGeneextract_intragenic_miRGene_Visualisationgenes_StatGetGOS_ALLmiRTargets_StatVisualisation
Dependencies:clicpp11evaluateFGNetgluehighrhwriterigraphknitrlatticelifecyclemagrittrMatrixpkgconfigplotrixplyrpngR.methodsS3R.ooR.utilsRColorBrewerRcppreshape2rlangstringistringrvctrsxfunXMLyaml
