Package: IVAS 2.27.0

Seonggyun Han

IVAS: Identification of genetic Variants affecting Alternative Splicing

Identification of genetic variants affecting alternative splicing.

Authors:Seonggyun Han, Sangsoo Kim

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IVAS.pdf |IVAS.html✨
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NEWS

# Install 'IVAS' in R:
install.packages('IVAS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:IVAS-2.27.0(bioc 3.21)IVAS-2.26.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologyalternativesplicingdifferentialexpressiondifferentialsplicinggeneexpressiongeneregulationregressionrnaseqsequencingsnpsoftwaretranscription

4.78 score 1 packages 1 scripts 265 downloads 49 mentions 11 exports 107 dependencies

Last updated 5 months agofrom:19b8da0ae6. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 18 2025
R-4.5-winWARNINGMar 18 2025
R-4.5-macWARNINGMar 18 2025
R-4.5-linuxWARNINGMar 18 2025
R-4.4-winWARNINGMar 18 2025
R-4.4-macWARNINGMar 18 2025
R-4.4-linuxWARNINGMar 18 2025
R-4.3-winWARNINGMar 18 2025
R-4.3-macWARNINGMar 18 2025

Exports:calSignificantCalSigSNPchrseparatefindAlternativefindOversnpMsqtlFinderRatioFromFPKMsaveBplotSplicingfindersqtlfindersQTLsFinder

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootcachemclicodetoolscolorspacecpp11crayoncurlDBIDelayedArraydoParalleldplyrfansifarverfastmapforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggfortifyggplot2gluegridExtragtablehttrIRangesisobanditeratorsjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelme4magrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminqamunsellnlmenloptropensslpillarpkgconfigplogrpngpurrrR6rbibutilsRColorBrewerRcppRcppEigenRCurlRdpackreformulasrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryaml

IVAS : Identification of genetic Variants affecting Alternative Splicing

Rendered fromIVAS.Rnwusingutils::Sweaveon Mar 18 2025.

Last update: 2017-03-09
Started: 2015-01-14