Package: HoloFoodR 0.99.8
Tuomas Borman
HoloFoodR: R interface to EBI HoloFood resource
Utility package to facilitate integration and analysis of EBI HoloFood data in R. This package streamlines access to the resource, allowing for direct loading of data into formats optimized for downstream analytics.
Authors:
HoloFoodR_0.99.8.tar.gz
HoloFoodR_0.99.8.zip(r-4.5)HoloFoodR_0.99.8.zip(r-4.4)HoloFoodR_0.99.8.zip(r-4.3)
HoloFoodR_0.99.8.tgz(r-4.4-any)HoloFoodR_0.99.8.tgz(r-4.3-any)
HoloFoodR_0.99.8.tar.gz(r-4.5-noble)HoloFoodR_0.99.8.tar.gz(r-4.4-noble)
HoloFoodR_0.99.8.tgz(r-4.4-emscripten)HoloFoodR_0.99.8.tgz(r-4.3-emscripten)
HoloFoodR.pdf |HoloFoodR.html✨
HoloFoodR/json (API)
NEWS
| # Install 'HoloFoodR' in R: |
| install.packages('HoloFoodR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ebi-metagenomics/holofoodr/issues
On BioConductor:HoloFoodR-0.99.7(bioc 3.20)
Last updated 13 days agofrom:815071128c
Exports:doQuerygetDatagetMetaboLightsgetResult
Dependencies:abindapeaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelBiostringscachemclicodetoolscpp11crayoncurlDelayedArraydigestdplyrfansifastmapformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrhttr2IRangesjsonlitelambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentnlmeopensslpillarpkgconfigpurrrR6rappdirsRcpprlangS4ArraysS4VectorsSingleCellExperimentsnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttidytreetreeioTreeSummarizedExperimentUCSC.utilsutf8vctrswithrXVectoryulab.utilszlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Search HoloFood database for animals, genome catalogues, samples, or viral catalogues | doQuery |
| Get data from HoloFood database | getData |
| Get metabolomic data from MetaboLights database | getMetaboLights |
| Get data on samples from HoloFood database | getResult |
| 'HoloFoodR' package | HoloFoodR-package HoloFoodR |