Package: HilbertCurve 2.7.0

Zuguang Gu

HilbertCurve: Making 2D Hilbert Curve

Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.

Authors:Zuguang Gu [aut, cre]

# Install 'HilbertCurve' in R:

install.packages('HilbertCurve', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jokergoo/hilbertcurve/issues

Pkgdown/docs site:https://jokergoo.github.io

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:HilbertCurve-2.7.0(bioc 3.24)HilbertCurve-2.6.0(bioc 3.23)

software visualization sequencing coverage genomeannotation cpp

7.68 score 44 stars 78 scripts 1 mentions 20 exports 13 dependencies

Last updated from:c4fc38a81a. Checks:1 WARNING, 11 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	172
linux-devel-arm64	NOTE	221
linux-devel-x86_64	NOTE	253
source / vignettes	OK	233
linux-release-arm64	NOTE	201
linux-release-x86_64	NOTE	253
macos-release-arm64	NOTE	167
macos-release-x86_64	NOTE	342
macos-oldrel-arm64	NOTE	193
macos-oldrel-x86_64	NOTE	403
windows-devel	NOTE	184
windows-release	NOTE	219
windows-oldrel	NOTE	200
wasm-release	OK	149

Exports:default_overlay GenomicHilbertCurve hc_centered_text hc_layer hc_level hc_map hc_normal_points hc_offset hc_png hc_points hc_polygon hc_rect hc_segmented_points hc_segments hc_text hc_which HilbertCurve is_white unzoom zoom

Dependencies:BiocGenerics circlize colorspace generics GenomicRanges GlobalOptions IRanges png polylabelr Rcpp S4Vectors Seqinfo shape

The HilbertCurve package

Rendered fromHilbertCurve.Rmdusingknitr::rmarkdown

Last update: 2024-09-10
Started: 2015-07-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Default color overlay for adding new layers	default_overlay
Initialize a Hilbert curve specifically for genomic data	GenomicHilbertCurve
The GenomicHilbertCurve class	GenomicHilbertCurve-class
Add text to the center of the block	hc_centered_text hc_centered_text,HilbertCurve-method
Method dispatch page for hc_layer	hc_layer
Add a new layer to the Hilbert curve	hc_layer,GenomicHilbertCurve-method
Add a new layer to the Hilbert curve	hc_layer,HilbertCurve-method
Level of the Hilbert curve	hc_level hc_level,HilbertCurve-method
Draw a map which represents positions of different chromosomes on the curve	hc_map hc_map,GenomicHilbertCurve-method
Add points to the Hilbert curve	hc_normal_points hc_normal_points,HilbertCurve-method
Adjust positions	hc_offset hc_offset,HilbertCurve-method
Save Hilbert curve as a PNG figure	hc_png hc_png,HilbertCurve-method
Method dispatch page for hc_points	hc_points
Add points to the Hilbert curve	hc_points,GenomicHilbertCurve-method
Add points to the Hilbert curve	hc_points,HilbertCurve-method
Method dispatch page for hc_polygon	hc_polygon
Add text to Hilbert curve	hc_polygon,GenomicHilbertCurve-method
Add polygons to Hilbert curve	hc_polygon,HilbertCurve-method
Method dispatch page for hc_rect	hc_rect
Add rectangles on Hilbert curve	hc_rect,GenomicHilbertCurve-method
Add rectangles on Hilbert curve	hc_rect,HilbertCurve-method
Add points to the Hilbert curve	hc_segmented_points hc_segmented_points,HilbertCurve-method
Method dispatch page for hc_segments	hc_segments
Add line segments to Hilbert curve	hc_segments,GenomicHilbertCurve-method
Add line segments to Hilbert curve	hc_segments,HilbertCurve-method
Method dispatch page for hc_text	hc_text
Add text to Hilbert curve	hc_text,GenomicHilbertCurve-method
Add text to Hilbert curve	hc_text,HilbertCurve-method
Method dispatch page for hc_which	hc_which
Query regions	hc_which,GenomicHilbertCurve-method
Query regions	hc_which,HilbertCurve-method
Initialize a Hilbert curve	HilbertCurve
The HilbertCurve class	HilbertCurve-class
Whether the color is white	is_white
Print the HilbertCurve object	show show,HilbertCurve-method
Transform zoomed positions to their original values	unzoom unzoom,HilbertCurve-method
Zoom original positions	zoom zoom,HilbertCurve-method