Package: HelloRanges 1.31.0

Michael Lawrence

HelloRanges: Introduce *Ranges to bedtools users

Translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.

Authors:Michael Lawrence

HelloRanges_1.31.0.tar.gz
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HelloRanges_1.31.0.tgz(r-4.4-any)HelloRanges_1.31.0.tgz(r-4.3-any)
HelloRanges_1.31.0.tar.gz(r-4.5-noble)HelloRanges_1.31.0.tar.gz(r-4.4-noble)
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HelloRanges.pdf |HelloRanges.html✨
HelloRanges/json (API)
NEWS

Peer review:

On BioConductor:HelloRanges-1.31.0(bioc 3.20)HelloRanges-1.30.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

57 exports 1.00 score 71 dependencies 1 dependents

Last updated 2 months agofrom:292d51caee

Exports:.R_bedtools_disjoinbedtools_closestbedtools_complementbedtools_coveragebedtools_flankbedtools_genomecovbedtools_getfastabedtools_groupbybedtools_intersectbedtools_jaccardbedtools_makewindowsbedtools_mapbedtools_mergebedtools_multiinterbedtools_nucbedtools_shiftbedtools_slopbedtools_subtractbedtools_unionbedgdistmodedo_bedtools_closestdo_bedtools_complementdo_bedtools_coveragedo_bedtools_flankdo_bedtools_genomecovdo_bedtools_getfastado_bedtools_groupbydo_bedtools_intersectdo_bedtools_jaccarddo_bedtools_makewindowsdo_bedtools_mapdo_bedtools_mergedo_bedtools_multiinterdo_bedtools_nucdo_bedtools_shiftdo_bedtools_slopdo_bedtools_subtractdo_bedtools_unionbedgpairR_bedtools_closestR_bedtools_complementR_bedtools_coverageR_bedtools_flankR_bedtools_genomecovR_bedtools_getfastaR_bedtools_groupbyR_bedtools_intersectR_bedtools_jaccardR_bedtools_makewindowsR_bedtools_mapR_bedtools_mergeR_bedtools_multiinterR_bedtools_nucR_bedtools_shiftR_bedtools_slopR_bedtools_subtractR_bedtools_unionbedg

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemclicodetoolscpp11crayoncurlDBIDelayedArraydocoptfastmapformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsVariantAnnotationvctrsXMLXVectoryamlzlibbioc