Introduction | Heterogeneous Error Model (HEM) | Empirical Bayes (EB) Prior Specification | False Discovery Rate (FDR) Thesholding | When One of either Biological or Experimental Replicates is Unavailble | Explanation of Arguments and Values
Package: HEM 1.85.0
HyungJun Cho
HEM: Heterogeneous error model for identification of differentially expressed genes under multiple conditions
This package fits heterogeneous error models for analysis of microarray data
Authors:
HEM_1.85.0.tar.gz
HEM_1.85.0.zip(r-4.7)HEM_1.85.0.zip(r-4.6)HEM_1.85.0.zip(r-4.5)
HEM_1.85.0.tgz(r-4.6-x86_64)HEM_1.85.0.tgz(r-4.6-arm64)HEM_1.85.0.tgz(r-4.5-x86_64)
HEM_1.85.0.tar.gz(r-4.7-arm64)HEM_1.85.0.tar.gz(r-4.7-x86_64)HEM_1.85.0.tar.gz(r-4.6-arm64)HEM_1.85.0.tar.gz(r-4.6-x86_64)
HEM_1.85.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
HEM/json (API)
| # Install 'HEM' in R: |
| install.packages('HEM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
On BioConductor:HEM-1.85.0(bioc 3.24)HEM-1.84.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraydifferentialexpression
Last updated from:db104754ba. Checks:1 ERROR, 7 NOTE, 2 OK, 3 WARNING, 1 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 154 | ||
| linux-devel-arm64 | NOTE | 139 | ||
| linux-devel-x86_64 | NOTE | 182 | ||
| source / vignettes | OK | 160 | ||
| linux-release-arm64 | NOTE | 133 | ||
| linux-release-x86_64 | NOTE | 187 | ||
| macos-release-arm64 | WARNING | 77 | ||
| macos-release-x86_64 | WARNING | 241 | ||
| macos-oldrel-arm64 | FAIL | 78 | ||
| macos-oldrel-x86_64 | WARNING | 254 | ||
| windows-devel | NOTE | 79 | ||
| windows-release | NOTE | 87 | ||
| windows-oldrel | NOTE | 80 | ||
| wasm-release | OK | 92 |
Exports:am.tranam.tran.halfbase.ASE.Oligbase.error.Oligbase.error.Olig.quanOnlybase.PSE.Oligboot.base.ASE.Oligboot.base.error.Oligboot.base.PSE.Oligfixbound.predict.smooth.splinehemhem.eb.priorhem.fdrhem.null.nohem.null.onehem.null.twohem.preprocnonpar.error.Olignonpar.no.error.Olignonpar.rep.error.Oligpar.error.Oligpar.no.error.Oligpar.rep.error.Oligpermutquant.normalquant.normal2remove.sig.genes
Dependencies:BiobaseBiocGenericsgenerics
