Package: HDTD 1.39.0
Anestis Touloumis
HDTD: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.
Authors:
HDTD_1.39.0.tar.gz
HDTD_1.39.0.zip(r-4.5)HDTD_1.39.0.zip(r-4.4)HDTD_1.39.0.zip(r-4.3)
HDTD_1.39.0.tgz(r-4.4-arm64)HDTD_1.39.0.tgz(r-4.4-x86_64)HDTD_1.39.0.tgz(r-4.3-arm64)HDTD_1.39.0.tgz(r-4.3-x86_64)
HDTD_1.39.0.tar.gz(r-4.5-noble)HDTD_1.39.0.tar.gz(r-4.4-noble)
HDTD_1.39.0.tgz(r-4.4-emscripten)HDTD_1.39.0.tgz(r-4.3-emscripten)
HDTD.pdf |HDTD.html✨
HDTD/json (API)
NEWS
| # Install 'HDTD' in R: |
| install.packages('HDTD', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/anestistouloumis/hdtd/issues
- VEGFmouse - Vascular Endothelial Growth Factor Mouse Dataset
On BioConductor:HDTD-1.39.0(bioc 3.20)HDTD-1.38.0(bioc 3.19)
Last updated 2 months agofrom:3009a50df4
Exports:centerdatacovmat.hatcovmat.tsmeanmat.hatmeanmat.tsorderdatatransposedata
Dependencies:RcppRcppArmadillo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimation and Hypothesis Testing in High-Dimensional Transposable Data | HDTD-package HDTD |
| Centering Transposable Data | centerdata |
| Estimation of the Row and of the Column Covariance Matrices. | covmat.hat print.covmat.hat |
| Nonparametric Tests for the Row or Column Covariance Matrix | covmat.ts print.covmat.ts |
| Estimation the Mean Matrix | meanmat.hat print.meanmat.hat |
| Nonparametric Tests for the Mean Matrix | meanmat.ts print.meanmat.ts |
| Reordering Row and Column Variables | orderdata |
| Interchanging the Row and Column Variables in Transposable Data | transposedata |
| Vascular Endothelial Growth Factor Mouse Dataset | VEGFmouse |
