Package: HDTD 1.41.0

Anestis Touloumis

HDTD: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)

Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.

Authors:Anestis Touloumis [cre, aut], John C. Marioni [aut], Simon Tavar\'{e} [aut]

HDTD_1.41.0.tar.gz
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HDTD.pdf |HDTD.html
HDTD/json (API)
NEWS

# Install 'HDTD' in R:
install.packages('HDTD', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/anestistouloumis/hdtd/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • VEGFmouse - Vascular Endothelial Growth Factor Mouse Dataset

On BioConductor:HDTD-1.41.0(bioc 3.21)HDTD-1.40.0(bioc 3.20)

differentialexpressiongeneticsgeneexpressionmicroarraysequencingstatisticalmethodsoftwarebioconductor-packagehigh-dimensionalstatisticsopenblascppopenmp

4.78 score 1 stars 187 downloads 1 mentions 7 exports 2 dependencies

Last updated 3 months agofrom:f05e068e77. Checks:11 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-win-x86_64OKJan 28 2025
R-4.5-mac-x86_64OKJan 28 2025
R-4.5-mac-aarch64OKJan 28 2025
R-4.5-linux-x86_64OKJan 28 2025
R-4.4-win-x86_64OKJan 28 2025
R-4.4-mac-x86_64OKJan 28 2025
R-4.4-mac-aarch64OKJan 28 2025
R-4.3-win-x86_64OKJan 28 2025
R-4.3-mac-x86_64OKJan 28 2025
R-4.3-mac-aarch64OKDec 29 2024

Exports:centerdatacovmat.hatcovmat.tsmeanmat.hatmeanmat.tsorderdatatransposedata

Dependencies:RcppRcppArmadillo

Using HDTD to Analyze High-Dimensional Transposable Data: An Application in Genetics

Rendered fromHDTD.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2019-10-29
Started: 2017-08-29