Package: HDTD 1.47.0

Anestis Touloumis

HDTD: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)

Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.

Authors:Anestis Touloumis [cre, aut], John C. Marioni [aut], Simon Tavar\'{e} [aut]

HDTD_1.47.0.tar.gz
HDTD_1.47.0.zip(r-4.7)HDTD_1.47.0.zip(r-4.6)HDTD_1.47.0.zip(r-4.5)
HDTD_1.47.0.tgz(r-4.6-x86_64)HDTD_1.47.0.tgz(r-4.6-arm64)HDTD_1.47.0.tgz(r-4.5-x86_64)HDTD_1.47.0.tgz(r-4.5-arm64)
HDTD_1.47.0.tar.gz(r-4.7-arm64)HDTD_1.47.0.tar.gz(r-4.7-x86_64)HDTD_1.47.0.tar.gz(r-4.6-arm64)HDTD_1.47.0.tar.gz(r-4.6-x86_64)
HDTD_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
HDTD/json (API)
NEWS

# Install 'HDTD' in R:
install.packages('HDTD', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/anestistouloumis/hdtd/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • VEGFmouse - Vascular Endothelial Growth Factor Mouse Dataset

On BioConductor:HDTD-1.47.0(bioc 3.24)HDTD-1.46.0(bioc 3.23)

differentialexpressiongeneticsgeneexpressionmicroarraysequencingstatisticalmethodsoftwarebioconductor-packagehigh-dimensionalstatisticsopenblascppopenmp

4.78 score 1 stars 3 scripts 348 downloads 1 mentions 7 exports 2 dependencies

Last updated from:fbbe8c060d. Checks:1 WARNING, 13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING133
linux-devel-arm64OK129
linux-devel-x86_64OK194
source / vignettesOK209
linux-release-arm64OK138
linux-release-x86_64OK190
macos-release-arm64OK122
macos-release-x86_64OK216
macos-oldrel-arm64OK92
macos-oldrel-x86_64OK191
windows-develOK145
windows-releaseOK105
windows-oldrelOK121
wasm-releaseOK121

Exports:centerdatacovmat.hatcovmat.tsmeanmat.hatmeanmat.tsorderdatatransposedata

Dependencies:RcppRcppArmadillo

Using HDTD to Analyze High-Dimensional Transposable Data: An Application in Genetics

Rendered fromHDTD.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2019-10-29
Started: 2017-08-29