Package: GraphAlignment 1.77.0
Joern P. Meier
GraphAlignment: GraphAlignment
Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))
Authors:
GraphAlignment_1.77.0.tar.gz
GraphAlignment_1.77.0.zip(r-4.7)GraphAlignment_1.77.0.zip(r-4.6)GraphAlignment_1.77.0.zip(r-4.5)
GraphAlignment_1.77.0.tgz(r-4.6-x86_64)GraphAlignment_1.77.0.tgz(r-4.6-arm64)GraphAlignment_1.77.0.tgz(r-4.5-x86_64)GraphAlignment_1.77.0.tgz(r-4.5-arm64)
GraphAlignment_1.77.0.tar.gz(r-4.7-arm64)GraphAlignment_1.77.0.tar.gz(r-4.7-x86_64)GraphAlignment_1.77.0.tar.gz(r-4.6-arm64)GraphAlignment_1.77.0.tar.gz(r-4.6-x86_64)
GraphAlignment_1.77.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GraphAlignment/json (API)
| # Install 'GraphAlignment' in R: |
| install.packages('GraphAlignment', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GraphAlignment-1.77.0(bioc 3.24)GraphAlignment-1.76.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:0793e079c8. Checks:1 ERROR, 4 WARNING, 2 OK, 7 NOTE. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 139 | ||
| linux-devel-arm64 | WARNING | 158 | ||
| linux-devel-x86_64 | WARNING | 127 | ||
| source / vignettes | OK | 184 | ||
| linux-release-arm64 | WARNING | 119 | ||
| linux-release-x86_64 | WARNING | 157 | ||
| macos-release-arm64 | NOTE | 83 | ||
| macos-release-x86_64 | NOTE | 207 | ||
| macos-oldrel-arm64 | NOTE | 70 | ||
| macos-oldrel-x86_64 | NOTE | 224 | ||
| windows-devel | NOTE | 94 | ||
| windows-release | NOTE | 61 | ||
| windows-oldrel | NOTE | 58 | ||
| wasm-release | OK | 83 |
Exports:.Last.libAlignedPairsAlignNetworksAnalyzeAlignmentComputeLinkParametersComputeMComputeNodeParametersComputeScoresCreateScoreMatrixEncodeDirectedGraphGenerateExampleGetBinNumberInitialAlignmentInvertPermutationLinearAssignmentMatrixToBinPermuteTraceVectorToBin
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get aligned node pairs | AlignedPairs |
| Align networks | AlignNetworks |
| Analyze an alignment | AnalyzeAlignment |
| Compute link parameters | ComputeLinkParameters |
| Compute score matrix M | ComputeM |
| Compute node parameters | ComputeNodeParameters |
| Compute scores | ComputeScores |
| Create score matrix | CreateScoreMatrix |
| Encode directed graph | EncodeDirectedGraph |
| Generate example input data | GenerateExample |
| Get bin number | GetBinNumber |
| Create initial alignment | InitialAlignment |
| Invert permutation | InvertPermutation |
| Solve linear assignment problem | LinearAssignment |
| Convert matrix to bin representation | MatrixToBin |
| Permute rows and columns of a matrix | Permute |
| Calculate trace of a matrix | Trace |
| Convert vector to bin representation | VectorToBin |