Package: GraphAlignment 1.71.0
Joern P. Meier
GraphAlignment: GraphAlignment
Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))
Authors:
GraphAlignment_1.71.0.tar.gz
GraphAlignment_1.71.0.zip(r-4.5)GraphAlignment_1.71.0.zip(r-4.4)GraphAlignment_1.71.0.zip(r-4.3)
GraphAlignment_1.71.0.tgz(r-4.4-x86_64)GraphAlignment_1.71.0.tgz(r-4.4-arm64)GraphAlignment_1.71.0.tgz(r-4.3-x86_64)GraphAlignment_1.71.0.tgz(r-4.3-arm64)
GraphAlignment_1.71.0.tar.gz(r-4.5-noble)GraphAlignment_1.71.0.tar.gz(r-4.4-noble)
GraphAlignment_1.71.0.tgz(r-4.4-emscripten)GraphAlignment_1.71.0.tgz(r-4.3-emscripten)
GraphAlignment.pdf |GraphAlignment.html✨
GraphAlignment/json (API)
| # Install 'GraphAlignment' in R: |
| install.packages('GraphAlignment', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GraphAlignment-1.71.0(bioc 3.21)GraphAlignment-1.70.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 25 days agofrom:3faa9a6d5e. Checks:OK: 1 WARNING: 1 NOTE: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 19 2024 |
| R-4.5-win-x86_64 | NOTE | Nov 19 2024 |
| R-4.5-linux-x86_64 | WARNING | Nov 19 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 19 2024 |
| R-4.4-mac-x86_64 | NOTE | Nov 19 2024 |
| R-4.4-mac-aarch64 | NOTE | Nov 19 2024 |
| R-4.3-win-x86_64 | NOTE | Nov 19 2024 |
| R-4.3-mac-x86_64 | NOTE | Nov 19 2024 |
| R-4.3-mac-aarch64 | NOTE | Nov 19 2024 |
Exports:.Last.libAlignedPairsAlignNetworksAnalyzeAlignmentComputeLinkParametersComputeMComputeNodeParametersComputeScoresCreateScoreMatrixEncodeDirectedGraphGenerateExampleGetBinNumberInitialAlignmentInvertPermutationLinearAssignmentMatrixToBinPermuteTraceVectorToBin
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get aligned node pairs | AlignedPairs |
| Align networks | AlignNetworks |
| Analyze an alignment | AnalyzeAlignment |
| Compute link parameters | ComputeLinkParameters |
| Compute score matrix M | ComputeM |
| Compute node parameters | ComputeNodeParameters |
| Compute scores | ComputeScores |
| Create score matrix | CreateScoreMatrix |
| Encode directed graph | EncodeDirectedGraph |
| Generate example input data | GenerateExample |
| Get bin number | GetBinNumber |
| Create initial alignment | InitialAlignment |
| Invert permutation | InvertPermutation |
| Solve linear assignment problem | LinearAssignment |
| Convert matrix to bin representation | MatrixToBin |
| Permute rows and columns of a matrix | Permute |
| Calculate trace of a matrix | Trace |
| Convert vector to bin representation | VectorToBin |