Package: GraphAT 1.77.0

Thomas LaFramboise

GraphAT: Graph Theoretic Association Tests

Functions and data used in Balasubramanian, et al. (2004)

Authors:R. Balasubramanian, T. LaFramboise, D. Scholtens

GraphAT_1.77.0.tar.gz
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GraphAT.pdf |GraphAT.html✨
GraphAT/json (API)

# Install 'GraphAT' in R:
install.packages('GraphAT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Phenoclusters - Yeast Gene-Knockout Fitness Data Cluster Memberships
  • causton - Yeast mRNA Expression Data
  • ccCM - Cell-Cycle Cluster Matrix
  • depthmatBP - Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
  • depthmatCC - Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
  • depthmatMF - Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
  • giaever - Yeast Gene-Knockout Fitness Data
  • mRNAclusters - Yeast mRNA Expression Data Cluster Memberships
  • nNamescc - Cell-Cycle Cluster Matrix

On BioConductor:GraphAT-1.77.0(bioc 3.20)GraphAT-1.76.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

7 exports 1.08 score 12 dependencies

Last updated 2 months agofrom:3bfb6270f6

Exports:clust2MatgetpvaluemakeClustMmat2UndirGpermEdgesM2MpermNodesM2MpermPower

Dependencies:BiocGenericscodagraphlatticeMASSMatrixMatrixModelsmcmcMCMCpackquantregSparseMsurvival