Package: GmicR 1.27.0

Abstract | Installation of Bioconductor packages | Step 1 for GMIC building: Accessing Expression data | Downloading expression data | NOTE: GmicR requires official gene symbols | QC of expression data | Exporting expression data for xCell signature analysis | The xCell results will be emailed to you. | Step 2 for GMIC building: gene module detection and annotation | WGCNA module detection | Module annotation | Step 3: Preparing module eigengenes and cell signatures for BN learning | Specify the "xCell results" file directory | Discretization | Step 4: BN learning | Bayesian network learing with bootstrapping. | Detecting arcs for inversly related nodes | GmicR shiny app | GMIC_network_Query | Module_names_Query | Module_names_BP_table