Package: Glimma 2.15.0

Shian Su

Glimma: Interactive visualizations for gene expression analysis

This package produces interactive visualizations for RNA-seq data analysis, utilizing output from limma, edgeR, or DESeq2. It produces interactive htmlwidgets versions of popular RNA-seq analysis plots to enhance the exploration of analysis results by overlaying interactive features. The plots can be viewed in a web browser or embedded in notebook documents.

Authors:Shian Su [aut, cre], Hasaru Kariyawasam [aut], Oliver Voogd [aut], Matthew Ritchie [aut], Charity Law [aut], Stuart Lee [ctb], Isaac Virshup [ctb]

Glimma_2.15.0.tar.gz
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Glimma.pdf |Glimma.html✨
Glimma/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/hasaru-k/glimmav2/issues

On BioConductor:Glimma-2.15.0(bioc 3.20)Glimma-2.14.0(bioc 3.19)

bioconductor-package

9 exports 3.36 score 89 dependencies 2 dependents 17 mentions

Last updated 2 months agofrom:fe089cb37c

Exports:glimmaMAglimmaMDglimmaMDSglimmaVolcanoglimmaXYglMDPlotglMDRmdglMDSPlotglXYPlot

Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocParallelbslibcachemclicodetoolscolorspacecpp11crayoncurlDelayedArrayDESeq2digestedgeRevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteknitrlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigR6rappdirsRColorBrewerRcppRcppArmadillorlangrmarkdownS4ArraysS4VectorssassscalessnowSparseArraystatmodSummarizedExperimentsystibbletinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc