Package: GenomicScores 2.25.1

Robert Castelo

GenomicScores: Infrastructure to work with genomewide position-specific scores

Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.

Authors:Robert Castelo [aut, cre], Pau Puigdevall [ctb], Pablo Rodríguez [ctb]

GenomicScores_2.25.1.tar.gz
GenomicScores_2.25.1.zip(r-4.7)GenomicScores_2.25.1.zip(r-4.6)GenomicScores_2.25.1.zip(r-4.5)
GenomicScores_2.25.1.tgz(r-4.6-any)GenomicScores_2.25.1.tgz(r-4.5-any)
GenomicScores_2.25.1.tar.gz(r-4.7-any)GenomicScores_2.25.1.tar.gz(r-4.6-any)
GenomicScores_2.25.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GenomicScores/json (API)
NEWS

# Install 'GenomicScores' in R:
install.packages('GenomicScores', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rcastelo/genomicscores/issues

On BioConductor:GenomicScores-2.25.0(bioc 3.24)GenomicScores-2.24.0(bioc 3.23)

infrastructuregeneticsannotationsequencingcoverageannotationhubsoftware

8.93 score 9 stars 6 packages 100 scripts 1.2k downloads 2 mentions 32 exports 75 dependencies

Last updated from:162043feaa. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR541
linux-devel-x86_64NOTE680
source / vignettesOK655
linux-release-x86_64NOTE674
macos-release-arm64NOTE329
macos-oldrel-arm64NOTE309
windows-develNOTE618
windows-releaseNOTE549
windows-oldrelNOTE566
wasm-releaseOK499

Exports:availableGScorescitationdefaultPopulationdefaultPopulation<-dqfungetGScoresgscoresGScoresgscoresCategorygscoresCategory<-gscoresNonSNRsgscoresTaggscoresTag<-igscoresmakeGScoresPackagenamensitesorganismpopulationsproviderproviderVersionqfunrgscoresscorescoresseqinfoseqlengthsseqlevelsStyleseqnamesshowtypewgscores

Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsbiocmakeBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydir.expirydplyrfastmapfilelockgenericsGenomeInfoDbGenomicRangesglueh5mreadHDF5Arrayhttrhttr2IRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrhdf5rhdf5filtersRhdf5librlangRSQLiteS4ArraysS4VectorsSeqinfoSparseArraystringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVectoryaml

An introduction to the GenomicScores package

Pau Puigdevall, Robert Castelo

Rendered fromGenomicScores.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2024-04-02
Started: 2017-04-07

Readme and manuals

Help Manual

Help pageTopics
Exploring genomic scores resourcesavailableGScores getGScores
Accessing genomic gscoresgscores gscores,GScores,character-method gscores,GScores,GenomicRanges-method score,GScores-method
GScores objectscitation citation,character-method citation,GScores-method citation,missing-method class:GScores defaultPopulation defaultPopulation,GScores-method defaultPopulation<- defaultPopulation<-,GScores,character-method dqfun dqfun,GScores-method GenomicScores GScores GScores-class gscoresCategory gscoresCategory,GScores-method gscoresCategory<- gscoresCategory<-,GScores,character-method gscoresNonSNRs gscoresNonSNRs,GScores-method gscoresTag gscoresTag,GScores-method gscoresTag<- gscoresTag<-,GScores,character-method name name,GScores-method nsites nsites,GScores-method organism,GScores-method populations populations,GScores-method provider,GScores-method providerVersion,GScores-method qfun qfun,GScores-method seqinfo,GScores-method seqlengths,GScores-method seqlevelsStyle,GScores-method seqnames,GScores-method show,GScores-method type type,GScores-method
GenomicScores shiny appigscores
Building genomic gscores packagesmakeGScoresPackage
Sampling genomic gscoresrgscores rgscores,GScores,missing-method rgscores,integer,GScores-method rgscores,missing,GScores-method rgscores,numeric,GScores-method
Discovering genomic gscoreswgscores wgscores,GScores,GenomicRanges-method