Package: GenomicScores 2.17.0
GenomicScores: Infrastructure to work with genomewide position-specific scores
Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.
Authors:
GenomicScores_2.17.0.tar.gz
GenomicScores_2.17.0.zip(r-4.5)GenomicScores_2.17.0.zip(r-4.4)GenomicScores_2.17.0.zip(r-4.3)
GenomicScores_2.17.0.tgz(r-4.4-any)GenomicScores_2.17.0.tgz(r-4.3-any)
GenomicScores_2.17.0.tar.gz(r-4.5-noble)GenomicScores_2.17.0.tar.gz(r-4.4-noble)
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GenomicScores.pdf |GenomicScores.html✨
GenomicScores/json (API)
NEWS
# Install 'GenomicScores' in R: |
install.packages('GenomicScores', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rcastelo/genomicscores/issues
On BioConductor:GenomicScores-2.17.0(bioc 3.20)GenomicScores-2.16.0(bioc 3.19)
Last updated 2 months agofrom:b2a17ddb2a
Exports:availableGScorescitationdefaultPopulationdefaultPopulation<-dqfungetGScoresgscoresGScoresgscoresCategorygscoresCategory<-gscoresNonSNRsgscoresTaggscoresTag<-igscoresmakeGScoresPackagenamensitesorganismpopulationsproviderproviderVersionqfunrgscoresscorescoresseqinfoseqlengthsseqlevelsStyleseqnamesshowtypewgscores
Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueHDF5ArrayhttrIRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngpurrrR6rappdirsrhdf5rhdf5filtersRhdf5librlangRSQLiteS4ArraysS4VectorsSparseArraystringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLXVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Exploring genomic scores resources | availableGScores getGScores |
Accessing genomic gscores | gscores gscores,GScores,character-method gscores,GScores,GenomicRanges-method score,GScores-method |
GScores objects | citation citation,character-method citation,GScores-method citation,missing-method class:GScores defaultPopulation defaultPopulation,GScores-method defaultPopulation<- defaultPopulation<-,GScores,character-method dqfun dqfun,GScores-method GenomicScores GScores GScores-class gscoresCategory gscoresCategory,GScores-method gscoresCategory<- gscoresCategory<-,GScores,character-method gscoresNonSNRs gscoresNonSNRs,GScores-method gscoresTag gscoresTag,GScores-method gscoresTag<- gscoresTag<-,GScores,character-method name name,GScores-method nsites nsites,GScores-method organism,GScores-method populations populations,GScores-method provider,GScores-method providerVersion,GScores-method qfun qfun,GScores-method seqinfo,GScores-method seqlengths,GScores-method seqlevelsStyle,GScores-method seqnames,GScores-method show,GScores-method type type,GScores-method |
GenomicScores shiny app | igscores |
Building genomic gscores packages | makeGScoresPackage |
Sampling genomic gscores | rgscores rgscores,GScores,missing-method rgscores,integer,GScores-method rgscores,missing,GScores-method rgscores,numeric,GScores-method |
Discovering genomic gscores | wgscores wgscores,GScores,GenomicRanges-method |