Package: GeneStructureTools 1.27.0
Beth Signal
GeneStructureTools: Tools for spliced gene structure manipulation and analysis
GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.
Authors:
GeneStructureTools_1.27.0.tar.gz
GeneStructureTools_1.27.0.zip(r-4.5)GeneStructureTools_1.27.0.zip(r-4.4)GeneStructureTools_1.27.0.zip(r-4.3)
GeneStructureTools_1.27.0.tgz(r-4.4-any)GeneStructureTools_1.27.0.tgz(r-4.3-any)
GeneStructureTools_1.27.0.tar.gz(r-4.5-noble)GeneStructureTools_1.27.0.tar.gz(r-4.4-noble)
GeneStructureTools_1.27.0.tgz(r-4.4-emscripten)GeneStructureTools_1.27.0.tgz(r-4.3-emscripten)
GeneStructureTools.pdf |GeneStructureTools.html✨
GeneStructureTools/json (API)
NEWS
# Install 'GeneStructureTools' in R: |
install.packages('GeneStructureTools', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GeneStructureTools-1.27.0(bioc 3.21)GeneStructureTools-1.26.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologysoftwaredifferentialsplicingfunctionalpredictiontranscriptomicsalternativesplicingrnaseq
Last updated 2 months agofrom:001986bed3. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 14 2024 |
R-4.5-win | OK | Dec 14 2024 |
R-4.5-linux | OK | Dec 14 2024 |
R-4.4-win | OK | Dec 14 2024 |
R-4.4-mac | OK | Dec 14 2024 |
R-4.3-win | OK | Dec 14 2024 |
R-4.3-mac | OK | Dec 14 2024 |
Exports:addBroadTypesaddIntronInTranscriptalternativeIntronUsageannotateGeneModelattrChangeAltSplicedcoordinatesDEXSeqIdsToGeneIdsdiffSplicingResultsexonsToTranscriptsfilterGtfOverlapfilterWhippetEventsfindDEXexonTypefindExonContainingTranscriptsfindIntronContainingTranscriptsfindJunctionPairsformatWhippetEventsgetOrfsgetUOrfsjunctionsleafcutterTranscriptChangeSummarymakeGeneModelmaxLocationorfDifforfSimilarityoverlapTypesreadCountsreadWhippetDataSetreadWhippetDIFFfilesreadWhippetJNCfilesreadWhippetPSIfilesremoveDuplicateTranscriptsremoveSameExonremoveVersionreorderExonNumbersreplaceJunctionskipExonInTranscriptsummariseExonTypestranscriptChangeSummaryUTR2UTR53whippetTranscriptChangeSummary
Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomeBSgenome.Mmusculus.UCSC.mm10bslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrensembldbevaluatefansifarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtableGvizhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslpillarpkgconfigplogrplyrpngprettyunitsprogressProtGenericspurrrR6rappdirsRColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystringdiststringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2XVectoryamlzlibbioc