Package: GeneNetworkBuilder 1.49.0
Jianhong Ou
GeneNetworkBuilder: GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data
Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.
Authors:
GeneNetworkBuilder_1.49.0.tar.gz
GeneNetworkBuilder_1.49.0.zip(r-4.5)GeneNetworkBuilder_1.49.0.zip(r-4.4)GeneNetworkBuilder_1.49.0.zip(r-4.3)
GeneNetworkBuilder_1.49.0.tgz(r-4.4-x86_64)GeneNetworkBuilder_1.49.0.tgz(r-4.4-arm64)GeneNetworkBuilder_1.49.0.tgz(r-4.3-x86_64)GeneNetworkBuilder_1.49.0.tgz(r-4.3-arm64)
GeneNetworkBuilder_1.49.0.tar.gz(r-4.5-noble)GeneNetworkBuilder_1.49.0.tar.gz(r-4.4-noble)
GeneNetworkBuilder_1.49.0.tgz(r-4.4-emscripten)GeneNetworkBuilder_1.49.0.tgz(r-4.3-emscripten)
GeneNetworkBuilder.pdf |GeneNetworkBuilder.html✨
GeneNetworkBuilder/json (API)
NEWS
| # Install 'GeneNetworkBuilder' in R: |
| install.packages('GeneNetworkBuilder', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- ce.IDsMap - C.elegns gene name to wormbase identifier map
- ce.interactionmap - Transcript regulatory map of _Caenorhabditis elegans_
- ce.mapIDs - Map file for converting from wormbase identifier to _Caenorhabditis elegans_ gene name
- ce.miRNA.map - Micro RNA of _Caenorhabditis elegans_
- example.data - Example datasets for documentation
- hs.IDsMap - Map file for converting gene name or sequence name of _Homo sapiens_ to Entrez identifier
- hs.interactionmap - Transcript regulation map of _Homo sapiens_
- hs.mapIDs - Map file for converting from Entrez identifier to _Homo sapiens_ gene name
- hs.miRNA.map - Micro RNA of _Homo sapiens_
On BioConductor:GeneNetworkBuilder-1.49.0(bioc 3.21)GeneNetworkBuilder-1.48.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
sequencingmicroarraygraphandnetwork
Last updated 23 days agofrom:53853469ec. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 05 2024 |
| R-4.5-win-x86_64 | OK | Nov 05 2024 |
| R-4.5-linux-x86_64 | OK | Nov 05 2024 |
| R-4.4-win-x86_64 | OK | Nov 05 2024 |
| R-4.4-mac-x86_64 | OK | Nov 05 2024 |
| R-4.4-mac-aarch64 | OK | Nov 05 2024 |
| R-4.3-win-x86_64 | OK | Nov 05 2024 |
| R-4.3-mac-x86_64 | OK | Nov 05 2024 |
| R-4.3-mac-aarch64 | OK | Nov 05 2024 |
Exports:browseNetworkbrowseNetworkOutputbuildNetworkconvertIDcy3NetworkexportNetworkfilterNetworknetworkFromGenespolishNetworkrenderBrowseNetworksubsetNetworkuniqueExprsData
Dependencies:askpassbackportsbase64encbase64urlBiocGenericsbitopsbslibcachemcaToolsclicrayoncurldigestevaluatefansifastmapfontawesomefsgenericsgluegplotsgraphgtoolshighrhtmltoolshtmlwidgetshttrIRdisplayIRkerneljquerylibjsonliteKernSmoothknitrlifecyclememoisemimeopensslpbdZMQpillarplyrR6rappdirsRColorBrewerRcppRCurlRCy3reprRgraphvizrjsonRJSONIOrlangrmarkdownsassstringisystinytexutf8uuidvctrsxfunXMLyaml
