Package: GeneGeneInteR 1.31.0
GeneGeneInteR: Tools for Testing Gene-Gene Interaction at the Gene Level
The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results. <doi:10.18637/jss.v095.i12>.
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GeneGeneInteR_1.31.0.tar.gz
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GeneGeneInteR.pdf |GeneGeneInteR.html✨
GeneGeneInteR/json (API)
NEWS
# Install 'GeneGeneInteR' in R: |
install.packages('GeneGeneInteR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GeneGeneInteR-1.31.0(bioc 3.20)GeneGeneInteR-1.30.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:442f1b3bf3
Exports:CCA.testCLD.testgates.testGBIGM.testGGIimportFileimputeSnpMatrixKCCA.testminP.testPCA.testPLSPM.testselectSnpssnpMatrixScourtProd.testtTS.test
Dependencies:abindaskpassbackportsbase64encBHBiocGenericsBiocParallelBiostringsbitopsbootbriobroombslibcachemcallrcarcarDatacliclustercodetoolscolorspacecpp11crayoncrosstalkcurldata.tabledescdiffobjdigestdplyrDTellipseemmeansestimabilityevaluateFactoMineRfansifarverfastmapflashClustfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobandjquerylibjsonlitekernlabknitrlabelinglambda.rlaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmimeminqamultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgbuildpkgconfigpkgloadpraiseprocessxpromisespspurrrquantregR6rappdirsRColorBrewerRcppRcppEigenrematch2RhtslibrlangrmarkdownrprojrootRsamtoolsS4Vectorssassscalesscatterplot3dsnowsnpStatsSparseMstringistringrsurvivalsystestthattibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewaldowithrxfunXVectoryamlzlibbioc