Introduction | Getting Started | Data Ranking | Rank Merging | Similarity Measuring | Signature Distance | Implementation Details | Adaptively Weighted Rank Merging | Eqully Weighted Rank Merging | Futher Analysis | Session Information | References
Package: GeneExpressionSignature 1.59.0
Yang Cao
GeneExpressionSignature: Gene Expression Signature based Similarity Metric
This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.
Authors:
GeneExpressionSignature_1.59.0.tar.gz
GeneExpressionSignature_1.59.0.zip(r-4.7)GeneExpressionSignature_1.59.0.zip(r-4.6)GeneExpressionSignature_1.59.0.zip(r-4.5)
GeneExpressionSignature_1.59.0.tgz(r-4.6-any)GeneExpressionSignature_1.59.0.tgz(r-4.5-any)
GeneExpressionSignature_1.59.0.tar.gz(r-4.7-any)GeneExpressionSignature_1.59.0.tar.gz(r-4.6-any)
GeneExpressionSignature_1.59.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GeneExpressionSignature/json (API)
| # Install 'GeneExpressionSignature' in R: |
| install.packages('GeneExpressionSignature', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yiluheihei/geneexpressionsignature/issues
Datasets:
- exampleSet - Sample data, a subset of the C-MAP
On BioConductor:GeneExpressionSignature-1.59.0(bioc 3.24)GeneExpressionSignature-1.58.0(bioc 3.23)
Last updated from:dfa732bab5. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 156 | ||
| linux-devel-x86_64 | OK | 223 | ||
| source / vignettes | OK | 198 | ||
| linux-release-x86_64 | OK | 167 | ||
| macos-release-arm64 | OK | 102 | ||
| macos-oldrel-arm64 | OK | 90 | ||
| windows-devel | OK | 90 | ||
| windows-release | OK | 106 | ||
| windows-oldrel | OK | 85 | ||
| wasm-release | OK | 160 |
Exports:getRLsRankMergingScoreGSEAScorePGSEASignatureDistance
Dependencies:BiobaseBiocGenericsgenerics
