Package: GeneExpressionSignature 1.53.0
Yang Cao
GeneExpressionSignature: Gene Expression Signature based Similarity Metric
This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.
Authors:
GeneExpressionSignature_1.53.0.tar.gz
GeneExpressionSignature_1.53.0.zip(r-4.5)GeneExpressionSignature_1.53.0.zip(r-4.4)GeneExpressionSignature_1.53.0.zip(r-4.3)
GeneExpressionSignature_1.53.0.tgz(r-4.4-any)GeneExpressionSignature_1.53.0.tgz(r-4.3-any)
GeneExpressionSignature_1.53.0.tar.gz(r-4.5-noble)GeneExpressionSignature_1.53.0.tar.gz(r-4.4-noble)
GeneExpressionSignature_1.53.0.tgz(r-4.4-emscripten)GeneExpressionSignature_1.53.0.tgz(r-4.3-emscripten)
GeneExpressionSignature.pdf |GeneExpressionSignature.html✨
GeneExpressionSignature/json (API)
NEWS
| # Install 'GeneExpressionSignature' in R: |
| install.packages('GeneExpressionSignature', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yiluheihei/geneexpressionsignature/issues
- exampleSet - Sample data, a subset of the C-MAP
On BioConductor:GeneExpressionSignature-1.51.0(bioc 3.20)GeneExpressionSignature-1.50.0(bioc 3.19)
Last updated 23 days agofrom:fe30f47cb6. Checks:OK: 6 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | OK | Oct 30 2024 |
| R-4.5-linux | OK | Oct 30 2024 |
| R-4.4-win | OK | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | OK | Oct 30 2024 |
| R-4.3-mac | OK | Oct 30 2024 |
Exports:getRLsRankMergingScoreGSEAScorePGSEASignatureDistance
Dependencies:BiobaseBiocGenerics
