Package: GSgalgoR 1.23.0

Carlos Catania

GSgalgoR: An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatures in Cancer

A multi-objective optimization algorithm for disease sub-type discovery based on a non-dominated sorting genetic algorithm. The 'Galgo' framework combines the advantages of clustering algorithms for grouping heterogeneous 'omics' data and the searching properties of genetic algorithms for feature selection. The algorithm search for the optimal number of clusters determination considering the features that maximize the survival difference between sub-types while keeping cluster consistency high.

Authors:Martin Guerrero [aut], Carlos Catania [cre]

GSgalgoR_1.23.0.tar.gz
GSgalgoR_1.23.0.zip(r-4.7)GSgalgoR_1.23.0.zip(r-4.6)GSgalgoR_1.23.0.zip(r-4.5)
GSgalgoR_1.23.0.tgz(r-4.6-any)GSgalgoR_1.23.0.tgz(r-4.5-any)
GSgalgoR_1.23.0.tar.gz(r-4.7-any)GSgalgoR_1.23.0.tar.gz(r-4.6-any)
GSgalgoR_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GSgalgoR/json (API)
NEWS

# Install 'GSgalgoR' in R:
install.packages('GSgalgoR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/harpomaxx/gsgalgor/issues

On BioConductor:GSgalgoR-1.23.0(bioc 3.24)GSgalgoR-1.22.0(bioc 3.23)

geneexpressiontranscriptionclusteringclassificationsurvival

5.48 score 15 stars 6 scripts 342 downloads 21 exports 14 dependencies

Last updated from:e07306f1b4. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING186
linux-devel-x86_64NOTE278
source / vignettesOK291
linux-release-x86_64NOTE267
macos-release-arm64NOTE177
macos-oldrel-arm64NOTE134
windows-develNOTE160
windows-releaseNOTE176
windows-oldrelNOTE161
wasm-releaseOK152

Exports:calculate_distance_euclidean_cpucalculate_distance_pearson_cpucalculate_distance_spearman_cpucalculate_distance_uncentered_cpucallback_base_reportcallback_base_return_popcallback_defaultcallback_no_reportclassify_multiplecluster_algorithmcluster_classifycosine_similaritycreate_centroidsgalgok_centroidsnon_dominated_summaryplot_paretoselect_distancesurv_fitnessto_dataframeto_list

Dependencies:clustercodetoolsdoParallelforeachiteratorslatticematchingRMatrixmconsga2RproxyRcppRcppArmadillosurvival

GSgalgoR Callbacks Mechanism

Rendered fromGSgalgoR_callbacks.rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-10-20
Started: 2020-08-03

GSgalgoR user Guide

Martin E. Guerrero-Gimenez, Juan Manuel Fernandez-Muñoz, Carlos A. Catania

Rendered fromGSgalgoR.rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2021-05-22
Started: 2020-08-03