Package: GSgalgoR 1.17.0

Carlos Catania

GSgalgoR: An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatures in Cancer

A multi-objective optimization algorithm for disease sub-type discovery based on a non-dominated sorting genetic algorithm. The 'Galgo' framework combines the advantages of clustering algorithms for grouping heterogeneous 'omics' data and the searching properties of genetic algorithms for feature selection. The algorithm search for the optimal number of clusters determination considering the features that maximize the survival difference between sub-types while keeping cluster consistency high.

Authors:Martin Guerrero [aut], Carlos Catania [cre]

GSgalgoR_1.17.0.tar.gz
GSgalgoR_1.17.0.zip(r-4.5)GSgalgoR_1.17.0.zip(r-4.4)GSgalgoR_1.17.0.zip(r-4.3)
GSgalgoR_1.17.0.tgz(r-4.4-any)GSgalgoR_1.17.0.tgz(r-4.3-any)
GSgalgoR_1.17.0.tar.gz(r-4.5-noble)GSgalgoR_1.17.0.tar.gz(r-4.4-noble)
GSgalgoR_1.17.0.tgz(r-4.4-emscripten)GSgalgoR_1.17.0.tgz(r-4.3-emscripten)
GSgalgoR.pdf |GSgalgoR.html✨
GSgalgoR/json (API)
NEWS

# Install 'GSgalgoR' in R:
install.packages('GSgalgoR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/harpomaxx/gsgalgor/issues

On BioConductor:GSgalgoR-1.15.0(bioc 3.20)GSgalgoR-1.14.0(bioc 3.19)

geneexpressiontranscriptionclusteringclassificationsurvival

5.48 score 15 stars 6 scripts 154 downloads 21 exports 14 dependencies

Last updated 25 days agofrom:5111e23387. Checks:OK: 1 NOTE: 2 ERROR: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winERROROct 30 2024
R-4.4-macERROROct 30 2024
R-4.3-winERROROct 30 2024
R-4.3-macERROROct 30 2024

Exports:calculate_distance_euclidean_cpucalculate_distance_pearson_cpucalculate_distance_spearman_cpucalculate_distance_uncentered_cpucallback_base_reportcallback_base_return_popcallback_defaultcallback_no_reportclassify_multiplecluster_algorithmcluster_classifycosine_similaritycreate_centroidsgalgok_centroidsnon_dominated_summaryplot_paretoselect_distancesurv_fitnessto_dataframeto_list

Dependencies:clustercodetoolsdoParallelforeachiteratorslatticematchingRMatrixmconsga2RproxyRcppRcppArmadillosurvival

GSgalgoR Callbacks Mechanism

Rendered fromGSgalgoR_callbacks.rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2020-10-20
Started: 2020-08-03

GSgalgoR user Guide

Martin E. Guerrero-Gimenez, Juan Manuel Fernandez-Muñoz, Carlos A. Catania

Rendered fromGSgalgoR.rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2021-05-22
Started: 2020-08-03