Package: GSgalgoR 1.17.0

Carlos Catania

GSgalgoR: An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatures in Cancer

A multi-objective optimization algorithm for disease sub-type discovery based on a non-dominated sorting genetic algorithm. The 'Galgo' framework combines the advantages of clustering algorithms for grouping heterogeneous 'omics' data and the searching properties of genetic algorithms for feature selection. The algorithm search for the optimal number of clusters determination considering the features that maximize the survival difference between sub-types while keeping cluster consistency high.

Authors:Martin Guerrero [aut], Carlos Catania [cre]

GSgalgoR_1.17.0.tar.gz
GSgalgoR_1.17.0.zip(r-4.5)GSgalgoR_1.17.0.zip(r-4.4)GSgalgoR_1.17.0.zip(r-4.3)
GSgalgoR_1.17.0.tgz(r-4.5-any)GSgalgoR_1.17.0.tgz(r-4.4-any)GSgalgoR_1.17.0.tgz(r-4.3-any)
GSgalgoR_1.17.0.tar.gz(r-4.5-noble)GSgalgoR_1.17.0.tar.gz(r-4.4-noble)
GSgalgoR_1.17.0.tgz(r-4.4-emscripten)GSgalgoR_1.17.0.tgz(r-4.3-emscripten)
GSgalgoR.pdf |GSgalgoR.html✨
GSgalgoR/json (API)
NEWS

# Install 'GSgalgoR' in R:
install.packages('GSgalgoR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/harpomaxx/gsgalgor/issues

On BioConductor:GSgalgoR-1.17.0(bioc 3.21)GSgalgoR-1.16.0(bioc 3.20)

geneexpressiontranscriptionclusteringclassificationsurvival

5.48 score 15 stars 6 scripts 206 downloads 21 exports 14 dependencies

Last updated 4 months agofrom:5111e23387. Checks:5 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winNOTEJan 28 2025
R-4.5-macNOTEJan 28 2025
R-4.5-linuxNOTEJan 28 2025
R-4.4-winOKJan 28 2025
R-4.4-macOKJan 28 2025
R-4.3-winOKJan 28 2025
R-4.3-macOKJan 28 2025

Exports:calculate_distance_euclidean_cpucalculate_distance_pearson_cpucalculate_distance_spearman_cpucalculate_distance_uncentered_cpucallback_base_reportcallback_base_return_popcallback_defaultcallback_no_reportclassify_multiplecluster_algorithmcluster_classifycosine_similaritycreate_centroidsgalgok_centroidsnon_dominated_summaryplot_paretoselect_distancesurv_fitnessto_dataframeto_list

Dependencies:clustercodetoolsdoParallelforeachiteratorslatticematchingRMatrixmconsga2RproxyRcppRcppArmadillosurvival

GSgalgoR Callbacks Mechanism

Rendered fromGSgalgoR_callbacks.rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2020-10-20
Started: 2020-08-03

GSgalgoR user Guide

Martin E. Guerrero-Gimenez, Juan Manuel Fernandez-Muñoz, Carlos A. Catania

Rendered fromGSgalgoR.rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2021-05-22
Started: 2020-08-03