Package: GSReg 1.41.0

Bahman Afsari

GSReg: Gene Set Regulation (GS-Reg)

A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).

Authors:Bahman Afsari <[email protected]>, Elana J. Fertig <[email protected]>

GSReg_1.41.0.tar.gz
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GSReg.pdf |GSReg.html✨
GSReg/json (API)

# Install 'GSReg' in R:
install.packages('GSReg', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

    On BioConductor:GSReg-1.41.0(bioc 3.21)GSReg-1.40.0(bioc 3.20)

    This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

    generegulationpathwaysgeneexpressiongeneticvariabilitygenesetenrichmentalternativesplicing

    3.98 score 16 scripts 206 downloads 3 mentions 7 exports 101 dependencies

    Last updated 2 months agofrom:2723c81b80. Checks:OK: 1 WARNING: 8. Indexed: yes.

    TargetResultDate
    Doc / VignettesOKNov 26 2024
    R-4.5-win-x86_64WARNINGNov 26 2024
    R-4.5-linux-x86_64WARNINGNov 26 2024
    R-4.4-win-x86_64WARNINGNov 26 2024
    R-4.4-mac-x86_64WARNINGNov 26 2024
    R-4.4-mac-aarch64WARNINGNov 26 2024
    R-4.3-win-x86_64WARNINGNov 26 2024
    R-4.3-mac-x86_64WARNINGNov 26 2024
    R-4.3-mac-aarch64WARNINGNov 26 2024

    Exports:GSReg.GeneSets.DIRACGSReg.GeneSets.EVAGSReg.kendall.tau.distanceGSReg.kendall.tau.distance.restrictedGSReg.kendall.tau.distance.templateGSReg.overlapJunctionGSReg.SEVA

    Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesglueGO.dbgraphhmsHomo.sapienshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslorg.Hs.eg.dbOrganismDbipillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRBGLRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectTxDb.Hsapiens.UCSC.hg19.knownGenetxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryamlzlibbioc

    Working with the GSReg package

    Rendered fromGSReg.Rnwusingutils::Sweaveon Nov 26 2024.

    Last update: 2018-11-16
    Started: 2014-07-17