Introduction | Data set | Analysis for a single gene set | Analysis for multiple gene sets | Adaption of statistical tests | Visualization | Weighting of genes in gene sets
Package: GSRI 2.61.0
Julian Gehring
GSRI: Gene Set Regulation Index
The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).
Authors:
GSRI_2.61.0.tar.gz
GSRI_2.61.0.zip(r-4.7)GSRI_2.61.0.zip(r-4.6)GSRI_2.61.0.zip(r-4.5)
GSRI_2.61.0.tgz(r-4.6-any)GSRI_2.61.0.tgz(r-4.5-any)
GSRI_2.61.0.tar.gz(r-4.7-any)GSRI_2.61.0.tar.gz(r-4.6-any)
GSRI_2.61.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GSRI/json (API)
| # Install 'GSRI' in R: |
| install.packages('GSRI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GSRI-2.61.0(bioc 3.24)GSRI-2.60.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraytranscriptiondifferentialexpressiongenesetenrichmentgeneregulation
Last updated from:a3035fe48e. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 194 | ||
| linux-devel-x86_64 | OK | 258 | ||
| source / vignettes | OK | 243 | ||
| linux-release-x86_64 | OK | 248 | ||
| macos-release-arm64 | OK | 230 | ||
| macos-oldrel-arm64 | OK | 135 | ||
| windows-devel | OK | 186 | ||
| windows-release | OK | 188 | ||
| windows-oldrel | OK | 203 | ||
| wasm-release | OK | 147 |
Exports:exportgetCdfgetGsrigetParmsgsriplotreadClsreadGctrowFrowtshowsortGsrisummary
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobbootcachemcaToolsclicpp11crayoncurlDBIfastmapfdrtoolgenefiltergenericsgluegplotsgraphGSEABasegtoolshttrIRangesjsonliteKEGGRESTKernSmoothlatticeleslifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngR6RColorBrewerrlangRSQLiteS4VectorsSeqinfosurvivalsysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Set Regulation Index (GSRI) package | GSRI-package GSRI |
| Export results to file | export export,Gsri,character-method |
| Get methods for 'Gsri' class | getCdf getCdf,Gsri,ANY-method getCdf,Gsri,missing-method getGsri getGsri,Gsri,ANY-method getGsri,Gsri,missing-method getParms getParms,Gsri-method |
| Methods for the Gene Set Regulation Index (GSRI) | gsri gsri,ExpressionSet,factor,GeneSet-method gsri,ExpressionSet,factor,GeneSetCollection-method gsri,ExpressionSet,factor,missing-method gsri,matrix,factor,GeneSet-method gsri,matrix,factor,GeneSetCollection-method gsri,matrix,factor,missing-method gsri-methods |
| Class 'Gsri' | Gsri Gsri-class show show,Gsri-method summary summary,Gsri-method |
| Visualize GSRI results | plot plot,Gsri,ANY-method plot,Gsri,integer-method |
| Import of '.cls' and '.gct' files | readCls readCls,character-method readGct readGct,character-method |
| Sort GSRI results | sortGsri sortGsri,Gsri-method sortGsri-methods |
| Statistical test functions | limmat rowF rowt |