Package: GSRI 2.61.0

Julian Gehring

GSRI: Gene Set Regulation Index

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Authors:Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

GSRI_2.61.0.tar.gz
GSRI_2.61.0.zip(r-4.7)GSRI_2.61.0.zip(r-4.6)GSRI_2.61.0.zip(r-4.5)
GSRI_2.61.0.tgz(r-4.6-any)GSRI_2.61.0.tgz(r-4.5-any)
GSRI_2.61.0.tar.gz(r-4.7-any)GSRI_2.61.0.tar.gz(r-4.6-any)
GSRI_2.61.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GSRI/json (API)
NEWS

# Install 'GSRI' in R:
install.packages('GSRI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:GSRI-2.61.0(bioc 3.24)GSRI-2.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraytranscriptiondifferentialexpressiongenesetenrichmentgeneregulation

3.30 score 2 scripts 378 downloads 13 exports 55 dependencies

Last updated from:a3035fe48e. Checks:1 ERROR, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR200
linux-devel-x86_64OK274
source / vignettesOK264
linux-release-x86_64OK262
macos-release-arm64OK163
macos-oldrel-arm64OK151
windows-develOK198
windows-releaseOK184
windows-oldrelOK180
wasm-releaseOK124

Exports:exportgetCdfgetGsrigetParmsgsriplotreadClsreadGctrowFrowtshowsortGsrisummary

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobbootcachemcaToolsclicpp11crayoncurlDBIfastmapfdrtoolgenefiltergenericsgluegplotsgraphGSEABasegtoolshttrIRangesjsonliteKEGGRESTKernSmoothlatticeleslifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngR6RColorBrewerrlangRSQLiteS4VectorsSeqinfosurvivalsysvctrsXMLxtableXVector

Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index

Rendered fromgsri.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2012-03-11
Started: 2012-03-11

Readme and manuals

Help Manual

Help pageTopics
Gene Set Regulation Index (GSRI) packageGSRI-package GSRI
Export results to fileexport export,Gsri,character-method
Get methods for 'Gsri' classgetCdf getCdf,Gsri,ANY-method getCdf,Gsri,missing-method getGsri getGsri,Gsri,ANY-method getGsri,Gsri,missing-method getParms getParms,Gsri-method
Methods for the Gene Set Regulation Index (GSRI)gsri gsri,ExpressionSet,factor,GeneSet-method gsri,ExpressionSet,factor,GeneSetCollection-method gsri,ExpressionSet,factor,missing-method gsri,matrix,factor,GeneSet-method gsri,matrix,factor,GeneSetCollection-method gsri,matrix,factor,missing-method gsri-methods
Class 'Gsri'Gsri Gsri-class show show,Gsri-method summary summary,Gsri-method
Visualize GSRI resultsplot plot,Gsri,ANY-method plot,Gsri,integer-method
Import of '.cls' and '.gct' filesreadCls readCls,character-method readGct readGct,character-method
Sort GSRI resultssortGsri sortGsri,Gsri-method sortGsri-methods
Statistical test functionslimmat rowF rowt