Package: GSRI 2.55.0

Julian Gehring

GSRI: Gene Set Regulation Index

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Authors:Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

GSRI_2.55.0.tar.gz
GSRI_2.55.0.zip(r-4.5)GSRI_2.55.0.zip(r-4.4)GSRI_2.55.0.zip(r-4.3)
GSRI_2.55.0.tgz(r-4.4-any)GSRI_2.55.0.tgz(r-4.3-any)
GSRI_2.55.0.tar.gz(r-4.5-noble)GSRI_2.55.0.tar.gz(r-4.4-noble)
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GSRI.pdf |GSRI.html
GSRI/json (API)
NEWS

# Install 'GSRI' in R:
install.packages('GSRI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:GSRI-2.55.0(bioc 3.21)GSRI-2.54.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraytranscriptiondifferentialexpressiongenesetenrichmentgeneregulation

3.30 score 2 scripts 268 downloads 13 exports 59 dependencies

Last updated 23 days agofrom:5b1a284668. Checks:OK: 3 WARNING: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 05 2024
R-4.5-winWARNINGNov 05 2024
R-4.5-linuxWARNINGNov 05 2024
R-4.4-winWARNINGNov 05 2024
R-4.4-macOKNov 05 2024
R-4.3-winWARNINGNov 05 2024
R-4.3-macOKNov 05 2024

Exports:exportgetCdfgetGsrigetParmsgsriplotreadClsreadGctrowFrowtshowsortGsrisummary

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobbootcachemcaToolsclicpp11crayoncurlDBIfastmapfdrtoolgenefiltergenericsGenomeInfoDbGenomeInfoDbDatagluegplotsgraphGSEABasegtoolshttrIRangesjsonliteKEGGRESTKernSmoothlatticeleslifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6RColorBrewerrlangRSQLiteS4VectorssurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc

Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index

Rendered fromgsri.Rnwusingutils::Sweaveon Nov 05 2024.

Last update: 2012-03-11
Started: 2012-03-11

Readme and manuals

Help Manual

Help pageTopics
Gene Set Regulation Index (GSRI) packageGSRI-package GSRI
Export results to fileexport export,Gsri,character-method
Get methods for 'Gsri' classgetCdf getCdf,Gsri,ANY-method getCdf,Gsri,missing-method getGsri getGsri,Gsri,ANY-method getGsri,Gsri,missing-method getParms getParms,Gsri-method
Methods for the Gene Set Regulation Index (GSRI)gsri gsri,ExpressionSet,factor,GeneSet-method gsri,ExpressionSet,factor,GeneSetCollection-method gsri,ExpressionSet,factor,missing-method gsri,matrix,factor,GeneSet-method gsri,matrix,factor,GeneSetCollection-method gsri,matrix,factor,missing-method gsri-methods
Class 'Gsri'Gsri Gsri-class show show,Gsri-method summary summary,Gsri-method
Visualize GSRI resultsplot plot,Gsri,ANY-method plot,Gsri,integer-method
Import of '.cls' and '.gct' filesreadCls readCls,character-method readGct readGct,character-method
Sort GSRI resultssortGsri sortGsri,Gsri-method sortGsri-methods
Statistical test functionslimmat rowF rowt