Package: GSRI 2.55.0
Julian Gehring
GSRI: Gene Set Regulation Index
The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).
Authors:
GSRI_2.55.0.tar.gz
GSRI_2.55.0.zip(r-4.5)GSRI_2.55.0.zip(r-4.4)GSRI_2.55.0.zip(r-4.3)
GSRI_2.55.0.tgz(r-4.4-any)GSRI_2.55.0.tgz(r-4.3-any)
GSRI_2.55.0.tar.gz(r-4.5-noble)GSRI_2.55.0.tar.gz(r-4.4-noble)
GSRI_2.55.0.tgz(r-4.4-emscripten)GSRI_2.55.0.tgz(r-4.3-emscripten)
GSRI.pdf |GSRI.html✨
GSRI/json (API)
NEWS
| # Install 'GSRI' in R: |
| install.packages('GSRI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GSRI-2.55.0(bioc 3.21)GSRI-2.54.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraytranscriptiondifferentialexpressiongenesetenrichmentgeneregulation
Last updated 2 months agofrom:5b1a284668. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 05 2024 |
| R-4.5-win | OK | Dec 05 2024 |
| R-4.5-linux | OK | Dec 05 2024 |
| R-4.4-win | OK | Dec 05 2024 |
| R-4.4-mac | OK | Dec 05 2024 |
| R-4.3-win | OK | Dec 05 2024 |
| R-4.3-mac | OK | Dec 05 2024 |
Exports:exportgetCdfgetGsrigetParmsgsriplotreadClsreadGctrowFrowtshowsortGsrisummary
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobbootcachemcaToolsclicpp11crayoncurlDBIfastmapfdrtoolgenefiltergenericsGenomeInfoDbGenomeInfoDbDatagluegplotsgraphGSEABasegtoolshttrIRangesjsonliteKEGGRESTKernSmoothlatticeleslifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6RColorBrewerrlangRSQLiteS4VectorssurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Set Regulation Index (GSRI) package | GSRI-package GSRI |
| Export results to file | export export,Gsri,character-method |
| Get methods for 'Gsri' class | getCdf getCdf,Gsri,ANY-method getCdf,Gsri,missing-method getGsri getGsri,Gsri,ANY-method getGsri,Gsri,missing-method getParms getParms,Gsri-method |
| Methods for the Gene Set Regulation Index (GSRI) | gsri gsri,ExpressionSet,factor,GeneSet-method gsri,ExpressionSet,factor,GeneSetCollection-method gsri,ExpressionSet,factor,missing-method gsri,matrix,factor,GeneSet-method gsri,matrix,factor,GeneSetCollection-method gsri,matrix,factor,missing-method gsri-methods |
| Class 'Gsri' | Gsri Gsri-class show show,Gsri-method summary summary,Gsri-method |
| Visualize GSRI results | plot plot,Gsri,ANY-method plot,Gsri,integer-method |
| Import of '.cls' and '.gct' files | readCls readCls,character-method readGct readGct,character-method |
| Sort GSRI results | sortGsri sortGsri,Gsri-method sortGsri-methods |
| Statistical test functions | limmat rowF rowt |