Package: GSCA 2.43.0

Zhicheng Ji

GSCA: GSCA: Gene Set Context Analysis

GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.

Authors:Zhicheng Ji, Hongkai Ji

GSCA_2.43.0.tar.gz
GSCA_2.43.0.zip(r-4.7)GSCA_2.43.0.zip(r-4.6)GSCA_2.43.0.zip(r-4.5)
GSCA_2.43.0.tgz(r-4.6-any)GSCA_2.43.0.tgz(r-4.5-any)
GSCA_2.43.0.tar.gz(r-4.7-any)GSCA_2.43.0.tar.gz(r-4.6-any)
GSCA_2.43.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GSCA/json (API)
NEWS

# Install 'GSCA' in R:
install.packages('GSCA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • geneIDdata - Homologene data
  • Oct4ESC_TG - Oct4 activated (+) and repressed (-) target genes in embryonic stem cells
  • STAT1_TG - STAT1 activated (+) target genes defined from experimental ChIP-seq data and literature survey.

On BioConductor:GSCA-2.43.0(bioc 3.24)GSCA-2.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressionvisualizationgui

5.00 score 5 scripts 418 downloads 40 mentions 7 exports 58 dependencies

Last updated from:0148ef75cb. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR196
linux-devel-x86_64NOTE271
source / vignettesOK213
linux-release-x86_64NOTE272
macos-release-arm64NOTE182
macos-oldrel-arm64NOTE139
windows-develNOTE237
windows-releaseNOTE162
windows-oldrelNOTE206
wasm-releaseOK159

Exports:annotatePeaksConstructTGGSCAGSCAedaGSCAplotGSCAuitabSearch

Dependencies:base64encbiocmakebitopsbslibcachemcaToolsclicommonmarkcpp11digestdir.expiryfarverfastmapfilelockfontawesomefsggplot2gluegplotsgtablegtoolshtmltoolshttpuvisobandjquerylibjsonliteKernSmoothlabelinglaterlatticelifecyclemagrittrmemoisemimeotelplyrpromisesR6rappdirsRColorBrewerRcppreshape2rhdf5rhdf5filtersRhdf5librlangS7sassscalesshinysourcetoolsspstringistringrvctrsviridisLitewithrxtable

GSCA

Rendered fromGSCA.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2015-12-08
Started: 2014-02-25