Package: GSCA 2.37.0

Zhicheng Ji

GSCA: GSCA: Gene Set Context Analysis

GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.

Authors:Zhicheng Ji, Hongkai Ji

GSCA_2.37.0.tar.gz
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GSCA.pdf |GSCA.html✨
GSCA/json (API)
NEWS

# Install 'GSCA' in R:
install.packages('GSCA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Oct4ESC_TG - Oct4 activated (+) and repressed (-) target genes in embryonic stem cells
  • STAT1_TG - STAT1 activated (+) target genes defined from experimental ChIP-seq data and literature survey.
  • geneIDdata - Homologene data

On BioConductor:GSCA-2.37.0(bioc 3.21)GSCA-2.36.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressionvisualizationgui

5.00 score 5 scripts 210 downloads 40 mentions 7 exports 64 dependencies

Last updated 2 months agofrom:b2008f76c3. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 27 2024
R-4.5-winNOTENov 27 2024
R-4.5-linuxNOTENov 27 2024
R-4.4-winNOTENov 27 2024
R-4.4-macNOTENov 27 2024
R-4.3-winNOTENov 27 2024
R-4.3-macNOTENov 27 2024

Exports:annotatePeaksConstructTGGSCAGSCAedaGSCAplotGSCAuitabSearch

Dependencies:base64encbitopsbslibcachemcaToolsclicolorspacecommonmarkcrayondigestfansifarverfastmapfontawesomefsggplot2gluegplotsgtablegtoolshtmltoolshttpuvisobandjquerylibjsonliteKernSmoothlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrpromisesR6rappdirsRColorBrewerRcppreshape2rhdf5rhdf5filtersRhdf5librlangsassscalesshinysourcetoolsspstringistringrtibbleutf8vctrsviridisLitewithrxtable

GSCA

Rendered fromGSCA.Rnwusingutils::Sweaveon Nov 27 2024.

Last update: 2015-12-08
Started: 2014-02-25