Package: GSCA 2.35.0
Zhicheng Ji
GSCA: GSCA: Gene Set Context Analysis
GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.
Authors:
GSCA_2.35.0.tar.gz
GSCA_2.35.0.zip(r-4.5)GSCA_2.35.0.zip(r-4.4)GSCA_2.35.0.zip(r-4.3)
GSCA_2.35.0.tgz(r-4.4-any)GSCA_2.35.0.tgz(r-4.3-any)
GSCA_2.35.0.tar.gz(r-4.5-noble)GSCA_2.35.0.tar.gz(r-4.4-noble)
GSCA_2.35.0.tgz(r-4.4-emscripten)GSCA_2.35.0.tgz(r-4.3-emscripten)
GSCA.pdf |GSCA.html✨
GSCA/json (API)
NEWS
| # Install 'GSCA' in R: |
| install.packages('GSCA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Oct4ESC_TG - Oct4 activated (+) and repressed (-) target genes in embryonic stem cells
- STAT1_TG - STAT1 activated (+) target genes defined from experimental ChIP-seq data and literature survey.
- geneIDdata - Homologene data
On BioConductor:GSCA-2.35.0(bioc 3.20)GSCA-2.34.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:61085b0c37
Exports:annotatePeaksConstructTGGSCAGSCAedaGSCAplotGSCAuitabSearch
Dependencies:base64encbitopsbslibcachemcaToolsclicolorspacecommonmarkcrayondigestfansifarverfastmapfontawesomefsggplot2gluegplotsgtablegtoolshtmltoolshttpuvisobandjquerylibjsonliteKernSmoothlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrpromisesR6rappdirsRColorBrewerRcppreshape2rhdf5rhdf5filtersRhdf5librlangsassscalesshinysourcetoolsspstringistringrtibbleutf8vctrsviridisLitewithrxtable
