Package: GOpro 1.39.0

Lidia Chrabaszcz

GOpro: Find the most characteristic gene ontology terms for groups of human genes

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Authors:Lidia Chrabaszcz

GOpro_1.39.0.tar.gz
GOpro_1.39.0.zip(r-4.7)GOpro_1.39.0.zip(r-4.6)GOpro_1.39.0.zip(r-4.5)
GOpro_1.39.0.tgz(r-4.6-x86_64)GOpro_1.39.0.tgz(r-4.6-arm64)GOpro_1.39.0.tgz(r-4.5-x86_64)GOpro_1.39.0.tgz(r-4.5-arm64)
GOpro_1.39.0.tar.gz(r-4.7-arm64)GOpro_1.39.0.tar.gz(r-4.7-x86_64)GOpro_1.39.0.tar.gz(r-4.6-arm64)GOpro_1.39.0.tar.gz(r-4.6-x86_64)
GOpro_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GOpro/json (API)

# Install 'GOpro' in R:

install.packages('GOpro', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mi2-warsaw/gopro/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

exrtcga - Expressions of human genes.

On BioConductor:GOpro-1.39.0(bioc 3.24)GOpro-1.38.0(bioc 3.23)

annotation clustering go geneexpression genesetenrichment multiplecomparison cpp

3.60 score 2 stars 5 scripts 1 exports 78 dependencies

Last updated from:91eede13d3. Checks:1 ERROR, 13 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	242
linux-devel-arm64	OK	372
linux-devel-x86_64	OK	484
source / vignettes	OK	334
linux-release-arm64	OK	344
linux-release-x86_64	OK	396
macos-release-arm64	OK	231
macos-release-x86_64	OK	382
macos-oldrel-arm64	OK	233
macos-oldrel-x86_64	OK	467
windows-devel	OK	356
windows-release	OK	355
windows-oldrel	OK	318
wasm-release	OK	215

Exports:findGO

Dependencies:abind AnnotationDbi askpass BH Biobase BiocBaseUtils BiocGenerics Biostrings bit bit64 blob cachem cli codetools cpp11 crayon curl DBI DelayedArray dendextend doParallel dplyr farver fastmap foreach generics GenomicRanges ggplot2 glue GO.db gridExtra gtable httr IRanges isoband iterators jsonlite KEGGREST labeling lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime MultiAssayExperiment openssl org.Hs.eg.db pillar pkgconfig png purrr R6 RColorBrewer Rcpp rlang RSQLite S4Arrays S4Vectors S7 scales Seqinfo SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs viridis viridisLite withr XVector

GOpro: Determine groups of genes and find their most characteristic GO term

Rendered fromGOpro_vignette.Rmdusingknitr::rmarkdown

Last update: 2018-08-30
Started: 2016-10-07

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Expressions of human genes.	exrtcga
Find top Gene Ontology terms for given genes.	findGO
GOpro: find the most characteristic gene ontology terms for groups of genes	GOpro-package GOpro