Package: GOpro 1.33.0

Lidia Chrabaszcz

GOpro: Find the most characteristic gene ontology terms for groups of human genes

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Authors:Lidia Chrabaszcz

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NEWS

# Install 'GOpro' in R:
install.packages('GOpro', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mi2-warsaw/gopro/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • exrtcga - Expressions of human genes.

On BioConductor:GOpro-1.31.0(bioc 3.20)GOpro-1.30.0(bioc 3.19)

annotationclusteringgogeneexpressiongenesetenrichmentmultiplecomparison

3.60 score 2 stars 4 scripts 298 downloads 1 exports 87 dependencies

Last updated 23 days agofrom:5a8d05072c. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-win-x86_64OKOct 31 2024
R-4.5-linux-x86_64OKOct 30 2024
R-4.4-win-x86_64OKOct 31 2024
R-4.4-mac-x86_64OKOct 31 2024
R-4.4-mac-aarch64OKOct 31 2024
R-4.3-win-x86_64OKOct 31 2024
R-4.3-mac-x86_64OKOct 31 2024
R-4.3-mac-aarch64OKOct 31 2024

Exports:findGO

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiostringsbitbit64blobcachemclicodetoolscolorspacecpp11crayoncurlDBIDelayedArraydendextenddoParalleldplyrfansifarverfastmapforeachgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2glueGO.dbgridExtragtablehttrIRangesisobanditeratorsjsonliteKEGGRESTlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeMultiAssayExperimentmunsellnlmeopensslorg.Hs.eg.dbpillarpkgconfigplogrpngpurrrR6RColorBrewerRcpprlangRSQLiteS4ArraysS4VectorsscalesSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisviridisLitewithrXVectorzlibbioc

GOpro: Determine groups of genes and find their most characteristic GO term

Lidia Chrabaszcz

Rendered fromGOpro_vignette.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2018-08-30
Started: 2016-10-07