Package: GOpro 1.31.0

Lidia Chrabaszcz

GOpro: Find the most characteristic gene ontology terms for groups of human genes

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Authors:Lidia Chrabaszcz

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NEWS

# Install 'GOpro' in R:

install.packages('GOpro', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mi2-warsaw/gopro/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

exrtcga - Expressions of human genes.

On BioConductor:GOpro-1.31.0(bioc 3.20)GOpro-1.30.0(bioc 3.19)

bioconductor-package

1 exports 0.82 score 87 dependencies

Last updated 2 months agofrom:81a7080979

Exports:findGO

Dependencies:abind AnnotationDbi askpass BH Biobase BiocBaseUtils BiocGenerics Biostrings bit bit64 blob cachem cli codetools colorspace cpp11 crayon curl DBI DelayedArray dendextend doParallel dplyr fansi farver fastmap foreach generics GenomeInfoDb GenomeInfoDbData GenomicRanges ggplot2 glue GO.db gridExtra gtable httr IRanges isoband iterators jsonlite KEGGREST labeling lattice lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mgcv mime MultiAssayExperiment munsell nlme openssl org.Hs.eg.db pillar pkgconfig plogr png purrr R6 RColorBrewer Rcpp rlang RSQLite S4Arrays S4Vectors scales SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect UCSC.utils utf8 vctrs viridis viridisLite withr XVector zlibbioc

GOpro: Determine groups of genes and find their most characteristic GO term

Lidia Chrabaszcz

Rendered fromGOpro_vignette.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2018-08-30
Started: 2016-10-07

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Expressions of human genes.	exrtcga
Find top Gene Ontology terms for given genes.	findGO
GOpro: find the most characteristic gene ontology terms for groups of genes	GOpro-package GOpro