Package: GMRP 1.35.0
GMRP: GWAS-based Mendelian Randomization and Path Analyses
Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.
Authors:
GMRP_1.35.0.tar.gz
GMRP_1.35.0.zip(r-4.5)GMRP_1.35.0.zip(r-4.4)GMRP_1.35.0.zip(r-4.3)
GMRP_1.35.0.tgz(r-4.4-any)GMRP_1.35.0.tgz(r-4.3-any)
GMRP_1.35.0.tar.gz(r-4.5-noble)GMRP_1.35.0.tar.gz(r-4.4-noble)
GMRP_1.35.0.tgz(r-4.4-emscripten)GMRP_1.35.0.tgz(r-4.3-emscripten)
GMRP.pdf |GMRP.html✨
GMRP/json (API)
# Install 'GMRP' in R: |
install.packages('GMRP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- SNP358.data - Data of 358 SNPs
- SNP368annot.data - Annotation data of 368SNPs
- beta.data - Beta Data Of SNP Regressed on Causal Variables and Disease
- cad.data - BoldGWAS Meta-analyzed Data of Coronary Artery Disease
- lpd.data - *GWAS* Meta-analyzed Data of Lipoprotein Cholesterols
On BioConductor:GMRP-1.35.0(bioc 3.21)GMRP-1.34.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 23 days agofrom:261aa5d849. Checks:OK: 1 NOTE: 2 WARNING: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 19 2024 |
R-4.5-win | WARNING | Nov 19 2024 |
R-4.5-linux | NOTE | Nov 19 2024 |
R-4.4-win | WARNING | Nov 19 2024 |
R-4.4-mac | NOTE | Nov 19 2024 |
R-4.3-win | WARNING | Nov 19 2024 |
R-4.3-mac | WARNING | Nov 19 2024 |
Exports:chrpfmergemktablepathpathdiagrampathdiagram2snpPositAnnotucscannot
Dependencies:askpassBiocGenericscurldiagramgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslplotrixR6S4VectorsshapesysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
*GWAS*-based Mendelian Randomization Path Analysis | GMRP-package GMRP |
Beta Data Of SNP Regressed on Causal Variables and Disease | beta.data |
boldGWAS Meta-analyzed Data of Coronary Artery Disease | cad.data |
Split hg19 | chrp |
Merge Two *GWAS* Result Data Sheets | fmerge |
*GWAS* Meta-analyzed Data of Lipoprotein Cholesterols | lpd.data |
Selection of SNPs and Creation of A Standard Table for Mendelian Randomization and Path Analyses | mktable |
Path Analysis | path |
Path Diagram | pathdiagram |
Two-level Nested Pathdiagram | pathdiagram2 |
Data of 358 SNPs | SNP358.data |
Annotation data of 368SNPs | SNP368annot.data |
_SNP_ Position Annotation | snpPositAnnot |
Functional Annotation of _SNP_s Chosen | ucscannot |