Package: GMRP 1.35.0

Yuan-De Tan

GMRP: GWAS-based Mendelian Randomization and Path Analyses

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

Authors:Yuan-De Tan

GMRP_1.35.0.tar.gz
GMRP_1.35.0.zip(r-4.5)GMRP_1.35.0.zip(r-4.4)GMRP_1.35.0.zip(r-4.3)
GMRP_1.35.0.tgz(r-4.4-any)GMRP_1.35.0.tgz(r-4.3-any)
GMRP_1.35.0.tar.gz(r-4.5-noble)GMRP_1.35.0.tar.gz(r-4.4-noble)
GMRP_1.35.0.tgz(r-4.4-emscripten)GMRP_1.35.0.tgz(r-4.3-emscripten)
GMRP.pdf |GMRP.html✨
GMRP/json (API)

# Install 'GMRP' in R:

install.packages('GMRP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

SNP358.data - Data of 358 SNPs
SNP368annot.data - Annotation data of 368SNPs
beta.data - Beta Data Of SNP Regressed on Causal Variables and Disease
cad.data - BoldGWAS Meta-analyzed Data of Coronary Artery Disease
lpd.data - *GWAS* Meta-analyzed Data of Lipoprotein Cholesterols

On BioConductor:GMRP-1.35.0(bioc 3.21)GMRP-1.34.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencing regression snp

4.00 score 3 scripts 200 downloads 8 exports 21 dependencies

Last updated 2 months agofrom:261aa5d849. Checks:OK: 1 NOTE: 2 WARNING: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 19 2024
R-4.5-win	WARNING	Dec 19 2024
R-4.5-linux	NOTE	Dec 19 2024
R-4.4-win	WARNING	Dec 19 2024
R-4.4-mac	NOTE	Dec 19 2024
R-4.3-win	WARNING	Dec 19 2024
R-4.3-mac	WARNING	Dec 19 2024

Exports:chrp fmerge mktable path pathdiagram pathdiagram2 snpPositAnnot ucscannot

Dependencies:askpass BiocGenerics curl diagram generics GenomeInfoDb GenomeInfoDbData GenomicRanges httr IRanges jsonlite mime openssl plotrix R6 S4Vectors shape sys UCSC.utils XVector zlibbioc

Causal Effect Analysis of Risk Factors for Disease with the "GMRP" package

Rendered fromGMRP.Rnwusingutils::Sweaveon Dec 19 2024.

Last update: 2018-05-12
Started: 2016-03-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
GWAS-based Mendelian Randomization Path Analysis	GMRP-package GMRP
Beta Data Of SNP Regressed on Causal Variables and Disease	beta.data
boldGWAS Meta-analyzed Data of Coronary Artery Disease	cad.data
Split hg19	chrp
Merge Two GWAS Result Data Sheets	fmerge
GWAS Meta-analyzed Data of Lipoprotein Cholesterols	lpd.data
Selection of SNPs and Creation of A Standard Table for Mendelian Randomization and Path Analyses	mktable
Path Analysis	path
Path Diagram	pathdiagram
Two-level Nested Pathdiagram	pathdiagram2
Data of 358 SNPs	SNP358.data
Annotation data of 368SNPs	SNP368annot.data
_SNP_ Position Annotation	snpPositAnnot
Functional Annotation of _SNP_s Chosen	ucscannot