Package: GMRP 1.35.0

Yuan-De Tan

GMRP: GWAS-based Mendelian Randomization and Path Analyses

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

Authors:Yuan-De Tan

GMRP_1.35.0.tar.gz
GMRP_1.35.0.zip(r-4.5)GMRP_1.35.0.zip(r-4.4)GMRP_1.35.0.zip(r-4.3)
GMRP_1.35.0.tgz(r-4.4-any)GMRP_1.35.0.tgz(r-4.3-any)
GMRP_1.35.0.tar.gz(r-4.5-noble)GMRP_1.35.0.tar.gz(r-4.4-noble)
GMRP_1.35.0.tgz(r-4.4-emscripten)GMRP_1.35.0.tgz(r-4.3-emscripten)
GMRP.pdf |GMRP.html
GMRP/json (API)

# Install 'GMRP' in R:
install.packages('GMRP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • SNP358.data - Data of 358 SNPs
  • SNP368annot.data - Annotation data of 368SNPs
  • beta.data - Beta Data Of SNP Regressed on Causal Variables and Disease
  • cad.data - BoldGWAS Meta-analyzed Data of Coronary Artery Disease
  • lpd.data - *GWAS* Meta-analyzed Data of Lipoprotein Cholesterols

On BioConductor:GMRP-1.35.0(bioc 3.21)GMRP-1.34.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingregressionsnp

4.00 score 3 scripts 200 downloads 8 exports 21 dependencies

Last updated 23 days agofrom:261aa5d849. Checks:OK: 1 NOTE: 2 WARNING: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winWARNINGNov 19 2024
R-4.5-linuxNOTENov 19 2024
R-4.4-winWARNINGNov 19 2024
R-4.4-macNOTENov 19 2024
R-4.3-winWARNINGNov 19 2024
R-4.3-macWARNINGNov 19 2024

Exports:chrpfmergemktablepathpathdiagrampathdiagram2snpPositAnnotucscannot

Dependencies:askpassBiocGenericscurldiagramgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslplotrixR6S4VectorsshapesysUCSC.utilsXVectorzlibbioc

Causal Effect Analysis of Risk Factors for Disease with the "GMRP" package

Rendered fromGMRP.Rnwusingutils::Sweaveon Nov 19 2024.

Last update: 2018-05-12
Started: 2016-03-23