Overview | Data | GLAD classes | Analysis of array CGH profile | Graphical functions
Package: GLAD 2.77.0
Philippe Hupe
GLAD: Gain and Loss Analysis of DNA
Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.
Authors:
GLAD_2.77.0.tar.gz
GLAD_2.77.0.zip(r-4.7)GLAD_2.77.0.zip(r-4.6)GLAD_2.77.0.zip(r-4.5)
GLAD_2.77.0.tgz(r-4.6-x86_64)GLAD_2.77.0.tgz(r-4.6-arm64)GLAD_2.77.0.tgz(r-4.5-x86_64)GLAD_2.77.0.tgz(r-4.5-arm64)
GLAD_2.77.0.tar.gz(r-4.7-arm64)GLAD_2.77.0.tar.gz(r-4.7-x86_64)GLAD_2.77.0.tar.gz(r-4.6-arm64)GLAD_2.77.0.tar.gz(r-4.6-x86_64)
GLAD_2.77.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GLAD/json (API)
| # Install 'GLAD' in R: |
| install.packages('GLAD', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- array1 - Bladder cancer CGH data
- array2 - Bladder cancer CGH data
- array3 - Bladder cancer CGH data
- cytoband - Cytogenetic banding
- gm00143 - Public CGH data of Snijders
- gm01524 - Public CGH data of Snijders
- gm01535 - Public CGH data of Snijders
- gm01750 - Public CGH data of Snijders
- gm02948 - Public CGH data of Snijders
- gm03134 - Public CGH data of Snijders
- gm03563 - Public CGH data of Snijders
- gm03576 - Public CGH data of Snijders
- gm04435 - Public CGH data of Snijders
- gm05296 - Public CGH data of Snijders
- gm07081 - Public CGH data of Snijders
- gm07408 - Public CGH data of Snijders
- gm10315 - Public CGH data of Snijders
- gm13031 - Public CGH data of Snijders
- gm13330 - Public CGH data of Snijders
- P20 - Public CGH data of Veltman
- P9 - Public CGH data of Veltman
On BioConductor:GLAD-2.77.0(bioc 3.24)GLAD-2.76.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraycopynumbervariationgslcpp
Last updated from:d99f1e99d5. Checks:1 ERROR, 11 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 133 | ||
| linux-devel-arm64 | WARNING | 149 | ||
| linux-devel-x86_64 | WARNING | 172 | ||
| source / vignettes | OK | 194 | ||
| linux-release-arm64 | WARNING | 137 | ||
| linux-release-x86_64 | WARNING | 200 | ||
| macos-release-arm64 | WARNING | 105 | ||
| macos-release-x86_64 | WARNING | 169 | ||
| macos-oldrel-arm64 | WARNING | 122 | ||
| macos-oldrel-x86_64 | WARNING | 502 | ||
| windows-devel | WARNING | 105 | ||
| windows-release | WARNING | 148 | ||
| windows-oldrel | WARNING | 148 | ||
| wasm-release | OK | 104 |
Exports:affectationGNLaffectationGNL.profileCGHarrayPersparrayPersp.arrayCGHarrayPersp.defaultarrayPlotarrayPlot.arrayCGHarrayPlot.defaultas.data.frame.profileCGHas.profileCGHas.profileCGH.data.frameBkpInfoBkpInfo.profileCGHCheckDataCheckData.profileCGHchrBreakpointschrBreakpoints.profileCGHChrNumericclustergladclusterglad.hclustColorBardagladdaglad.profileCGHDelRegionTooSmalldetectOutliersdetectOutliers.profileChrdogenomestepFDRThresfilterBkpfilterBkp.profileCGHfilterBkpStepfilterBkpStep.profileCGHfindClusterfindCluster.profileChrgladglad.profileCGHHaarSegHaarSegGLADHaarSegGLADCPPhclustgladkernelpenlawsgladloopRemoveloopRemove.profileChrMoveBkpMoveBkp.profileCGHMoveBkpStepMoveBkpStep.profileCGHmyPaletteOptimBkpFindClusterOutliersGNLOutliersGNL.profileCGHplotCytoBandplotCytoBand.defaultplotProfileplotProfile.profileCGHprepare.output.dagladRecomputeGNLremoveBreakpointsremoveBreakpoints.profileChrremoveLevelremoveLevel.profileChrSegmentByPeaksselectindextestBkpToMovetestBkpToMove.profileCGH
Dependencies:awsawsMethodsgsl
