Package: GEOexplorer 1.11.0

Guy Hunt

GEOexplorer: GEOexplorer: a webserver for gene expression analysis and visualisation

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

Authors:Guy Hunt [aut, cre], Rafael Henkin [ctb, ths], Alfredo Iacoangeli [ctb, ths], Fabrizio Smeraldi [ctb, ths], Michael Barnes [ctb, ths]

GEOexplorer_1.11.0.tar.gz
GEOexplorer_1.11.0.zip(r-4.5)GEOexplorer_1.11.0.zip(r-4.4)GEOexplorer_1.11.0.zip(r-4.3)
GEOexplorer_1.11.0.tgz(r-4.4-any)GEOexplorer_1.11.0.tgz(r-4.3-any)
GEOexplorer_1.11.0.tar.gz(r-4.5-noble)GEOexplorer_1.11.0.tar.gz(r-4.4-noble)
GEOexplorer_1.11.0.tgz(r-4.4-emscripten)GEOexplorer_1.11.0.tgz(r-4.3-emscripten)
GEOexplorer.pdf |GEOexplorer.html✨
GEOexplorer/json (API)

# Install 'GEOexplorer' in R:

install.packages('GEOexplorer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/guypwhunt/geoexplorer/issues

On BioConductor:GEOexplorer-1.11.0(bioc 3.20)GEOexplorer-1.10.0(bioc 3.19)

bioconductor-package

1 exports 0.91 score 211 dependencies

Last updated 2 months agofrom:f631c1efbc

Exports:loadApp

Dependencies:abind annotate AnnotationDbi askpass assertthat backports base64enc BH Biobase BiocGenerics BiocParallel Biostrings bit bit64 blob boot brio broom bslib ca cachem callr car carData cellranger cli clipr cluster codetools colorspace commonmark corrplot cowplot cpp11 crayon crosstalk curl data.table DBI dendextend desc diffobj digest dplyr DT edgeR egg ellipse emmeans enrichR estimability evaluate factoextra FactoMineR fansi farver fastmap flashClust fontawesome foreach formatR fs futile.logger futile.options gclus genefilter generics GenomeInfoDb GenomeInfoDbData GEOquery ggplot2 ggpubr ggrepel ggsci ggsignif glue gridExtra gtable heatmaply here highr hms htmltools htmlwidgets httpuv httr impute IRanges isoband iterators jquerylib jsonlite KEGGREST knitr labeling lambda.r later lattice lazyeval leaps lifecycle limma lme4 locfit magrittr markdown MASS Matrix MatrixGenerics MatrixModels matrixStats memoise mgcv mime minqa multcompView munsell mvtnorm nlme nloptr nnet numDeriv openssl pbkrtest permute pheatmap pillar pkgbuild pkgconfig pkgload plogr plotly plyr png polynom praise prettyunits processx progress promises ps purrr qap quantreg R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp RcppEigen RcppTOML readr readxl registry rematch rematch2 reshape2 reticulate rjson rlang rmarkdown rprojroot RSpectra RSQLite rstatix S4Vectors sass scales scatterplot3d seriation shiny shinybusy shinycssloaders shinyHeatmaply snow sourcetools SparseM statmod stringi stringr survival sva sys testthat tibble tidyr tidyselect tinytex TSP tzdb UCSC.utils umap utf8 vctrs vegan viridis viridisLite vroom waldo webshot withr WriteXLS xfun XML xml2 xtable XVector yaml zlibbioc

GEOexplorer

Guy Hunt

Rendered fromGEOexplorer.Rmdusingknitr::rmarkdownon Jun 13 2024.

Last update: 2023-10-11
Started: 2021-07-26

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A Function to Load the GEOexplorer Shiny App	loadApp