Package: GEOexplorer 1.13.0

Guy Hunt

GEOexplorer: GEOexplorer: a webserver for gene expression analysis and visualisation

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

Authors:Guy Hunt [aut, cre], Rafael Henkin [ctb, ths], Alfredo Iacoangeli [ctb, ths], Fabrizio Smeraldi [ctb, ths], Michael Barnes [ctb, ths]

GEOexplorer_1.13.0.tar.gz
GEOexplorer_1.13.0.zip(r-4.5)GEOexplorer_1.13.0.zip(r-4.4)GEOexplorer_1.13.0.zip(r-4.3)
GEOexplorer_1.13.0.tgz(r-4.4-any)GEOexplorer_1.13.0.tgz(r-4.3-any)
GEOexplorer_1.13.0.tar.gz(r-4.5-noble)GEOexplorer_1.13.0.tar.gz(r-4.4-noble)
GEOexplorer_1.13.0.tgz(r-4.4-emscripten)GEOexplorer_1.13.0.tgz(r-4.3-emscripten)
GEOexplorer.pdf |GEOexplorer.html✨
GEOexplorer/json (API)

# Install 'GEOexplorer' in R:
install.packages('GEOexplorer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/guypwhunt/geoexplorer/issues

On BioConductor:GEOexplorer-1.13.0(bioc 3.21)GEOexplorer-1.12.0(bioc 3.20)

softwaregeneexpressionmrnamicroarraydifferentialexpressionmicroarraymicrornaarraytranscriptomicsrnaseq

5.32 score 5 stars 14 scripts 152 downloads 1 exports 216 dependencies

Last updated 2 months agofrom:6e19a44c73. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winWARNINGOct 30 2024
R-4.5-linuxWARNINGNov 29 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winWARNINGOct 30 2024
R-4.3-macWARNINGOct 31 2024

Exports:loadApp

Dependencies:abindannotateAnnotationDbiaskpassassertthatbackportsbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobbootbroombslibcacachemcallrcarcarDatacellrangerclicliprclustercodetoolscolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDBIDelayedArraydendextendDerivdigestdoBydplyrDTedgeReggellipseemmeansenrichRestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustfontawesomeforeachformatRFormulafsfutile.loggerfutile.optionsgclusgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGEOqueryggplot2ggpubrggrepelggsciggsignifgluegridExtragtableheatmaplyherehighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2imputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevalleapslifecyclelimmalme4locfitmagrittrmarkdownMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpermutepheatmappillarpkgconfigplogrplotlyplyrpngpolynomprettyunitsprocessxprogresspromisespspurrrqapquantregR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppEigenRcppTOMLreadrreadxlregistryrematchrentrezreshape2reticulaterjsonrlangrmarkdownrprojrootRSpectraRSQLiterstatixrvestS4ArraysS4Vectorssassscalesscatterplot3dselectrseriationshinyshinybusyshinycssloadersshinyHeatmaplysnowsourcetoolsSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsvasystibbletidyrtidyselecttinytexTSPtzdbUCSC.utilsumaputf8vctrsveganviridisviridisLitevroomwebshotwithrWriteXLSxfunXMLxml2xtableXVectoryamlzlibbioc

GEOexplorer

Guy Hunt

Rendered fromGEOexplorer.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2023-10-11
Started: 2021-07-26