Package: GEM 1.39.0

Hong Pan

GEM: GEM: fast association study for the interplay of Gene, Environment and Methylation

Tools for analyzing EWAS, methQTL and GxE genome widely.

Authors:Hong Pan, Joanna D Holbrook, Neerja Karnani, Chee-Keong Kwoh

GEM_1.39.0.tar.gz
GEM_1.39.0.zip(r-4.7)GEM_1.39.0.zip(r-4.6)GEM_1.39.0.zip(r-4.5)
GEM_1.39.0.tgz(r-4.6-any)GEM_1.39.0.tgz(r-4.5-any)
GEM_1.39.0.tar.gz(r-4.7-any)GEM_1.39.0.tar.gz(r-4.6-any)
GEM_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GEM/json (API)
NEWS

# Install 'GEM' in R:
install.packages('GEM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:GEM-1.39.0(bioc 3.24)GEM-1.38.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

methylseqmethylationarraygenomewideassociationregressiondnamethylationsnpgeneexpressiongui

5.53 score 34 scripts 359 downloads 317 mentions 5 exports 17 dependencies

Last updated from:6602fe2547. Checks:1 ERROR, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR153
linux-devel-x86_64OK217
source / vignettesOK207
linux-release-x86_64OK197
macos-release-arm64OK112
macos-oldrel-arm64OK132
windows-develOK112
windows-releaseOK100
windows-oldrelOK104
wasm-releaseOK109

Exports:GEM_EmodelGEM_GmodelGEM_GUIGEM_GWASmodelGEM_GxEmodel

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr

GEM: fast association study for the interplay of Gene, Environment and Methylation

Hong Pan

Rendered fromuser_guide.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2018-08-30
Started: 2016-06-04

Readme and manuals

Help Manual

Help pageTopics
GEM: Fast association study for the interplay of Gene, Environment and MethylationGEM-package
GEM_Emodel AnalysisGEM_Emodel
GEM_Gmodel AnalysisGEM_Gmodel
Graphical User Interface (GUI) for GEMGEM_GUI
GEM_GWASmodelGEM_GWASmodel
GEM_GxEmodelGEM_GxEmodel
Class 'SlicedData' for storing large matricesas.matrix,SlicedData-method colMeans,SlicedData-method colnames,SlicedData-method colnames<-,SlicedData-method colSums,SlicedData-method dim,SlicedData-method length,SlicedData-method NCOL,SlicedData-method ncol,SlicedData-method NROW,SlicedData-method nrow,SlicedData-method rowMeans,SlicedData-method rownames,SlicedData-method rownames<-,SlicedData-method rowSums,SlicedData-method show,SlicedData-method SlicedData SlicedData-class summary.SlicedData [[,SlicedData-method [[<-,SlicedData-method