Package: GARS 1.33.0

Mattia Chiesa
GARS: GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets
Feature selection aims to identify and remove redundant, irrelevant and noisy variables from high-dimensional datasets. Selecting informative features affects the subsequent classification and regression analyses by improving their overall performances. Several methods have been proposed to perform feature selection: most of them relies on univariate statistics, correlation, entropy measurements or the usage of backward/forward regressions. Herein, we propose an efficient, robust and fast method that adopts stochastic optimization approaches for high-dimensional. GARS is an innovative implementation of a genetic algorithm that selects robust features in high-dimensional and challenging datasets.
Authors:
GARS_1.33.0.tar.gz
GARS_1.33.0.zip(r-4.7)GARS_1.33.0.zip(r-4.6)GARS_1.33.0.zip(r-4.5)
GARS_1.33.0.tgz(r-4.6-any)GARS_1.33.0.tgz(r-4.5-any)
GARS_1.33.0.tar.gz(r-4.7-any)GARS_1.33.0.tar.gz(r-4.6-any)
GARS_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GARS/json (API)
NEWS
| # Install 'GARS' in R: |
| install.packages('GARS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- GARS_classes - RNA-seq dataset for testing GARS
- GARS_data_norm - RNA-seq dataset for testing GARS
- GARS_fit_list - RNA-seq dataset for testing GARS
- GARS_Fitness_score - RNA-seq dataset for testing GARS
- GARS_pop_list - RNA-seq dataset for testing GARS
- GARS_popul - RNA-seq dataset for testing GARS
- GARS_res_GA - A GarsSelectedFeatures object for testing GARS
On BioConductor:GARS-1.33.0(bioc 3.24)GARS-1.32.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
classificationfeatureextractionclusteringopenjdk
Last updated from:b89d2be640. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 293 | ||
| linux-devel-x86_64 | OK | 633 | ||
| source / vignettes | OK | 478 | ||
| linux-release-x86_64 | OK | 571 | ||
| macos-release-arm64 | OK | 310 | ||
| macos-oldrel-arm64 | OK | 269 | ||
| windows-devel | OK | 561 | ||
| windows-release | OK | 433 | ||
| windows-oldrel | OK | 430 | ||
| wasm-release | OK | 241 |
Exports:AllPopFitScoreGARS_create_rnd_populationGARS_CrossoverGARS_ElitismGARS_FitFunGARS_GAGARS_MutationGARS_PlotFeaturesUsageGARS_PlotFitnessEvolutionGARS_SelectionLastPopMatrixFeatures
Dependencies:abindannotateAnnotationDbiarmaroma.lightaskpassbackportsbase64encbdsmatrixBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbitbit64bitopsblobbootbriobroombslibcachemcallrcarcarDatacaretcaToolscheckmatecigarilloclasscliclockclustercodacodetoolscolorspacecorrplotcowplotcpp11crayoncrosstalkcurlDaMiRseqdata.tableDBIdbplyrDelayedArraydeldirDerivdescDESeq2diagramdiffobjdigestdoBydplyrDTe1071EDASeqedgeRellipseemmeansentropyestimabilityevaluateFactoMineRfarverfastmapfilelockflashClustfontawesomeforeachforecastforeignformatRFormulafracdifffsFSelectorfutile.loggerfutile.optionsfuturefuture.applygenalggenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2ggrepelglobalsgluegowergridExtragtablehardhathighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2hwriterigraphineqinterpipredIRangesisobanditeratorsjpegjquerylibjsonliteKEGGRESTKernSmoothkknnknitrlabelinglambda.rlaterlatticelatticeExtralavalazyevalleapslifecyclelimmalistenvlme4lmtestlocfitlubridatemagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqaMLSeqModelMetricsmodelrmultcompViewmvtnormnlmenloptrnnetnumDerivopensslotelpamrparallellypbkrtestpheatmappillarpkgbuildpkgconfigpkgloadplsplsVarSelplyrpngpraisepraznikprettyunitspROCprocessxprodlimprogressprogressrpromisesproxypspurrrpwalignquantregR.methodsS3R.ooR.utilsR6randomForestrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRCurlRdpackrecipesreformulasreshape2restfulrRhtslibrJavarjsonrlangrmarkdownrpartrprojrootRsamtoolsRSNNSRSQLiterstudioapirtracklayerRWekaRWekajarsS4ArraysS4VectorsS7sassscalesscatterplot3dSeqinfoshapeShortReadsnowSparseArraySparseMsparsevctrsSQUAREMsSeqstatmodstringistringrSummarizedExperimentsurvivalsvasystestthattibbletidyrtidyselecttimechangetimeDatetinytextzdburcautf8vctrsVennDiagramviridisLitewaldowithrxfunXMLxml2xtableXVectoryamlzoo