Package: GARS 1.27.0
Mattia Chiesa
GARS: GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets
Feature selection aims to identify and remove redundant, irrelevant and noisy variables from high-dimensional datasets. Selecting informative features affects the subsequent classification and regression analyses by improving their overall performances. Several methods have been proposed to perform feature selection: most of them relies on univariate statistics, correlation, entropy measurements or the usage of backward/forward regressions. Herein, we propose an efficient, robust and fast method that adopts stochastic optimization approaches for high-dimensional. GARS is an innovative implementation of a genetic algorithm that selects robust features in high-dimensional and challenging datasets.
Authors:
GARS_1.27.0.tar.gz
GARS_1.27.0.zip(r-4.5)GARS_1.27.0.zip(r-4.4)GARS_1.27.0.zip(r-4.3)
GARS_1.27.0.tgz(r-4.4-any)GARS_1.27.0.tgz(r-4.3-any)
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GARS.pdf |GARS.html✨
GARS/json (API)
NEWS
# Install 'GARS' in R: |
install.packages('GARS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- GARS_Fitness_score - RNA-seq dataset for testing GARS
- GARS_classes - RNA-seq dataset for testing GARS
- GARS_data_norm - RNA-seq dataset for testing GARS
- GARS_fit_list - RNA-seq dataset for testing GARS
- GARS_pop_list - RNA-seq dataset for testing GARS
- GARS_popul - RNA-seq dataset for testing GARS
- GARS_res_GA - A GarsSelectedFeatures object for testing GARS
On BioConductor:GARS-1.27.0(bioc 3.21)GARS-1.26.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
classificationfeatureextractionclustering
Last updated 23 days agofrom:d0acef70f1. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 19 2024 |
R-4.5-win | OK | Nov 19 2024 |
R-4.5-linux | OK | Nov 19 2024 |
R-4.4-win | OK | Nov 19 2024 |
R-4.4-mac | OK | Nov 19 2024 |
R-4.3-win | OK | Nov 19 2024 |
R-4.3-mac | OK | Nov 19 2024 |
Exports:AllPopFitScoreGARS_create_rnd_populationGARS_CrossoverGARS_ElitismGARS_FitFunGARS_GAGARS_MutationGARS_PlotFeaturesUsageGARS_PlotFitnessEvolutionGARS_SelectionLastPopMatrixFeatures
Dependencies:abindannotateAnnotationDbiarmaroma.lightaskpassbackportsbase64encbdsmatrixBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbitbit64bitopsblobbootbriobroombslibcachemcallrcarcarDatacaretcaToolscheckmateclasscliclockclustercodacodetoolscolorspacecorrplotcowplotcpp11crayoncrosstalkcurlDaMiRseqdata.tableDBIdbplyrDelayedArraydeldirDerivdescDESeq2diagramdiffobjdigestdoBydplyrDTe1071EDASeqedgeRellipseemmeansentropyestimabilityevaluateFactoMineRfansifarverfastmapfilelockflashClustfontawesomeforeachforeignformatRFormulafsFSelectorfutile.loggerfutile.optionsfuturefuture.applygenalggenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2ggrepelglobalsgluegowergridExtragtablehardhathighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvhttrhttr2hwriterigraphineqinterpipredIRangesisobanditeratorsjpegjquerylibjsonliteKEGGRESTKernSmoothkknnknitrlabelinglambda.rlaterlatticelatticeExtralavalazyevalleapslifecyclelimmalistenvlme4locfitlubridatemagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqaMLSeqModelMetricsmodelrmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpamrparallellypbkrtestpheatmappillarpkgbuildpkgconfigpkgloadplogrplsplsVarSelplyrpngpraisepraznikprettyunitspROCprocessxprodlimprogressprogressrpromisesproxypspurrrpwalignquantregR.methodsS3R.ooR.utilsR6randomForestrappdirsRColorBrewerRcppRcppArmadilloRcppEigenRCurlrecipesreshape2restfulrRhtslibrJavarjsonrlangrmarkdownrpartrprojrootRsamtoolsRSNNSRSQLiterstudioapirtracklayerRWekaRWekajarsS4ArraysS4Vectorssassscalesscatterplot3dshapeShortReadsnowSparseArraySparseMSQUAREMsSeqstatmodstringistringrSummarizedExperimentsurvivalsvasystestthattibbletidyrtidyselecttimechangetimeDatetinytextzdbUCSC.utilsutf8vctrsVennDiagramviridisviridisLitewaldowithrxfunXMLxml2xtableXVectoryamlzlibbioc