Package: GA4GHshiny 1.35.0
GA4GHshiny: Shiny application for interacting with GA4GH-based data servers
GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.
Authors:
GA4GHshiny_1.35.0.tar.gz
GA4GHshiny_1.35.0.zip(r-4.7)GA4GHshiny_1.35.0.zip(r-4.6)GA4GHshiny_1.35.0.zip(r-4.5)
GA4GHshiny_1.35.0.tgz(r-4.6-any)GA4GHshiny_1.35.0.tgz(r-4.5-any)
GA4GHshiny_1.35.0.tar.gz(r-4.7-any)GA4GHshiny_1.35.0.tar.gz(r-4.6-any)
GA4GHshiny_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GA4GHshiny/json (API)
| # Install 'GA4GHshiny' in R: |
| install.packages('GA4GHshiny', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/labbcb/ga4ghshiny/issues
On BioConductor:GA4GHshiny-1.35.0(bioc 3.24)GA4GHshiny-1.34.0(bioc 3.23)
Last updated from:31c4828997. Checks:1 WARNING, 7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 258 | ||
| linux-devel-x86_64 | ERROR | 506 | ||
| source / vignettes | OK | 341 | ||
| linux-release-x86_64 | ERROR | 447 | ||
| macos-release-arm64 | ERROR | 227 | ||
| macos-oldrel-arm64 | ERROR | 232 | ||
| windows-devel | ERROR | 345 | ||
| windows-release | ERROR | 361 | ||
| windows-oldrel | ERROR | 319 | ||
| wasm-release | OK | 231 |
Exports:appcountGenotype
Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomebslibcachemcigarilloclicodetoolscommonmarkcpp11crayoncrosstalkcurlDBIDelayedArraydigestdplyrDTevaluatefastmapfontawesomeformatRfsfutile.loggerfutile.optionsGA4GHclientgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluehighrhtmltoolshtmlwidgetshttpuvhttrIRangesjquerylibjsonliteKEGGRESTknitrlambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslopenxlsxotelpillarpkgconfigpngpromisespurrrR6rappdirsRcppRCurlrestfulrRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassSeqinfoshinyshinyjsshinythemessnowsourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8VariantAnnotationvctrswithrxfunXMLxtableXVectoryamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Shiny application for interacting with GA4GH-based data servers | GA4GHshiny-package GA4GHshiny |
| Open web application | app |
| Count genotype | countGenotype |
