Package: ExploreModelMatrix 1.25.0

Charlotte Soneson

ExploreModelMatrix: Graphical Exploration of Design Matrices

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Authors:Charlotte Soneson [aut, cre], Federico Marini [aut], Michael Love [aut], Florian Geier [aut], Michael Stadler [aut]

ExploreModelMatrix_1.25.0.tar.gz
ExploreModelMatrix_1.25.0.zip(r-4.7-any)ExploreModelMatrix_1.25.0.zip(r-4.6-any)ExploreModelMatrix_1.25.0.zip(r-4.5-any)
ExploreModelMatrix_1.25.0.tgz(r-4.6-any)ExploreModelMatrix_1.25.0.tgz(r-4.5-any)
ExploreModelMatrix_1.25.0.tar.gz(r-4.7-any)ExploreModelMatrix_1.25.0.tar.gz(r-4.6-any)
ExploreModelMatrix_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ExploreModelMatrix/json (API)

# Install 'ExploreModelMatrix' in R:
install.packages('ExploreModelMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/csoneson/exploremodelmatrix/issues

On BioConductor:ExploreModelMatrix-1.25.0(bioc 3.24)ExploreModelMatrix-1.24.0(bioc 3.23)

experimentaldesignregressiondifferentialexpressionshinyapps

8.10 score 38 stars 103 scripts 604 downloads 2 mentions 2 exports 72 dependencies

Last updated from:384a0c2d9a. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE151
linux-develOK317
source / vignettesOK199
linux-releaseOK217
macos-releaseOK126
macos-oldrelOK128
windows-develOK99
windows-releaseOK109
windows-oldrelOK111
wasm-releaseOK108

Exports:ExploreModelMatrixVisualizeDesign

Dependencies:base64encBiocGenericsbslibcachemclicommonmarkcowplotcpp11crosstalkdigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlazyevallifecyclelimmamagrittrMASSmemoisemimeotelpillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprintrojsrlangrmarkdownS4VectorsS7sassscalesshinyshinydashboardshinyjssourcetoolsstatmodstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml

Interactive exploration of design matrices with ExploreModelMatrix
Introduction | Interface | Examples | Example 1 | Example 2 | Example 3 | Exporting data from the app | Session info

Last update: 2024-03-02
Started: 2020-03-27

Deploying ExploreModelMatrix on a Shiny Server
Why deploying ExploreModelMatrix on a Shiny server? | How to deploy ExploreModelMatrix | Step 1: Setting up the Shiny Server | Step 2: setup ExploreModelMatrix | Installing ExploreModelMatrix | Setup ExploreModelMatrix on the server | ExploreModelMatrix at the IMBEI | Session info

Last update: 2020-06-14
Started: 2020-04-19

Readme and manuals

Help Manual

Help pageTopics
Explore model matrixExploreModelMatrix
Visualize design matrixVisualizeDesign