Package: ExploreModelMatrix 1.19.2

Charlotte Soneson

ExploreModelMatrix: Graphical Exploration of Design Matrices

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Authors:Charlotte Soneson [aut, cre], Federico Marini [aut], Michael Love [aut], Florian Geier [aut], Michael Stadler [aut]

ExploreModelMatrix_1.19.2.tar.gz
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ExploreModelMatrix_1.19.2.tar.gz(r-4.5-noble)ExploreModelMatrix_1.19.2.tar.gz(r-4.4-noble)
ExploreModelMatrix_1.19.2.tgz(r-4.4-emscripten)ExploreModelMatrix_1.19.2.tgz(r-4.3-emscripten)
ExploreModelMatrix.pdf |ExploreModelMatrix.html
ExploreModelMatrix/json (API)
NEWS

# Install 'ExploreModelMatrix' in R:
install.packages('ExploreModelMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/csoneson/exploremodelmatrix/issues

On BioConductor:ExploreModelMatrix-1.19.2(bioc 3.21)ExploreModelMatrix-1.18.0(bioc 3.20)

experimentaldesignregressiondifferentialexpressionshinyapps

8.22 score 37 stars 81 scripts 388 downloads 2 mentions 2 exports 78 dependencies

Last updated 2 months agofrom:dce1f5963b. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 02 2025
R-4.5-winOKMar 02 2025
R-4.5-macOKMar 02 2025
R-4.5-linuxOKMar 02 2025
R-4.4-winOKMar 02 2025
R-4.4-macOKMar 02 2025
R-4.3-winOKMar 02 2025
R-4.3-macOKMar 02 2025

Exports:ExploreModelMatrixVisualizeDesign

Dependencies:base64encBiocGenericsbslibcachemclicolorspacecommonmarkcowplotcpp11crayoncrosstalkdigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprintrojsrlangrmarkdownS4Vectorssassscalesshinyshinydashboardshinyjssourcetoolsstatmodstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml

Interactive exploration of design matrices with ExploreModelMatrix

Rendered fromExploreModelMatrix.Rmdusingknitr::rmarkdownon Mar 02 2025.

Last update: 2024-03-02
Started: 2020-03-27

Deploying ExploreModelMatrix on a Shiny Server

Rendered fromEMMdeploy.Rmdusingknitr::rmarkdownon Mar 02 2025.

Last update: 2020-06-14
Started: 2020-04-19

Readme and manuals

Help Manual

Help pageTopics
Explore model matrixExploreModelMatrix
Visualize design matrixVisualizeDesign