Package: ExploreModelMatrix 1.17.0

Charlotte Soneson

ExploreModelMatrix: Graphical Exploration of Design Matrices

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Authors:Charlotte Soneson [aut, cre], Federico Marini [aut], Michael Love [aut], Florian Geier [aut], Michael Stadler [aut]

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ExploreModelMatrix.pdf |ExploreModelMatrix.html
ExploreModelMatrix/json (API)
NEWS

# Install 'ExploreModelMatrix' in R:
install.packages('ExploreModelMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/csoneson/exploremodelmatrix/issues

On BioConductor:ExploreModelMatrix-1.17.0(bioc 3.20)ExploreModelMatrix-1.16.0(bioc 3.19)

bioconductor-package

2 exports 0.82 score 78 dependencies 2 mentions

Last updated 2 months agofrom:130d586bd5

Exports:ExploreModelMatrixVisualizeDesign

Dependencies:base64encBiocGenericsbslibcachemclicolorspacecommonmarkcowplotcpp11crayoncrosstalkdigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprintrojsrlangrmarkdownS4Vectorssassscalesshinyshinydashboardshinyjssourcetoolsstatmodstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml

Interactive exploration of design matrices with ExploreModelMatrix

Rendered fromExploreModelMatrix.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2024-03-02
Started: 2020-03-27

Deploying ExploreModelMatrix on a Shiny Server

Rendered fromEMMdeploy.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2020-06-14
Started: 2020-04-19

Readme and manuals

Help Manual

Help pageTopics
Explore model matrixExploreModelMatrix
Visualize design matrixVisualizeDesign