Package: ExploreModelMatrix 1.19.0

Charlotte Soneson

ExploreModelMatrix: Graphical Exploration of Design Matrices

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Authors:Charlotte Soneson [aut, cre], Federico Marini [aut], Michael Love [aut], Florian Geier [aut], Michael Stadler [aut]

ExploreModelMatrix_1.19.0.tar.gz
ExploreModelMatrix_1.19.0.zip(r-4.5)ExploreModelMatrix_1.19.0.zip(r-4.4)ExploreModelMatrix_1.19.0.zip(r-4.3)
ExploreModelMatrix_1.19.0.tgz(r-4.4-any)ExploreModelMatrix_1.19.0.tgz(r-4.3-any)
ExploreModelMatrix_1.19.0.tar.gz(r-4.5-noble)ExploreModelMatrix_1.19.0.tar.gz(r-4.4-noble)
ExploreModelMatrix_1.19.0.tgz(r-4.4-emscripten)ExploreModelMatrix_1.19.0.tgz(r-4.3-emscripten)
ExploreModelMatrix.pdf |ExploreModelMatrix.html
ExploreModelMatrix/json (API)
NEWS

# Install 'ExploreModelMatrix' in R:
install.packages('ExploreModelMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/csoneson/exploremodelmatrix/issues

On BioConductor:ExploreModelMatrix-1.19.0(bioc 3.21)ExploreModelMatrix-1.18.0(bioc 3.20)

experimentaldesignregressiondifferentialexpressionshinyapps

8.03 score 36 stars 75 scripts 326 downloads 2 mentions 2 exports 78 dependencies

Last updated 21 days agofrom:1858abe9da. Checks:OK: 3 WARNING: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 03 2024
R-4.5-winWARNINGNov 03 2024
R-4.5-linuxWARNINGNov 03 2024
R-4.4-winWARNINGNov 03 2024
R-4.4-macOKNov 03 2024
R-4.3-winWARNINGNov 03 2024
R-4.3-macOKNov 03 2024

Exports:ExploreModelMatrixVisualizeDesign

Dependencies:base64encBiocGenericsbslibcachemclicolorspacecommonmarkcowplotcpp11crayoncrosstalkdigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprintrojsrlangrmarkdownS4Vectorssassscalesshinyshinydashboardshinyjssourcetoolsstatmodstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml

Interactive exploration of design matrices with ExploreModelMatrix

Rendered fromExploreModelMatrix.Rmdusingknitr::rmarkdownon Nov 03 2024.

Last update: 2024-03-02
Started: 2020-03-27

Deploying ExploreModelMatrix on a Shiny Server

Rendered fromEMMdeploy.Rmdusingknitr::rmarkdownon Nov 03 2024.

Last update: 2020-06-14
Started: 2020-04-19

Readme and manuals

Help Manual

Help pageTopics
Explore model matrixExploreModelMatrix
Visualize design matrixVisualizeDesign