Package: ExploreModelMatrix 1.25.0

Charlotte Soneson

ExploreModelMatrix: Graphical Exploration of Design Matrices

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Authors:Charlotte Soneson [aut, cre], Federico Marini [aut], Michael Love [aut], Florian Geier [aut], Michael Stadler [aut]

ExploreModelMatrix_1.25.0.tar.gz
ExploreModelMatrix_1.25.0.zip(r-4.7)ExploreModelMatrix_1.25.0.zip(r-4.6)ExploreModelMatrix_1.25.0.zip(r-4.5)
ExploreModelMatrix_1.25.0.tgz(r-4.6-any)ExploreModelMatrix_1.25.0.tgz(r-4.5-any)
ExploreModelMatrix_1.25.0.tar.gz(r-4.7-any)ExploreModelMatrix_1.25.0.tar.gz(r-4.6-any)
ExploreModelMatrix_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
ExploreModelMatrix/json (API)

# Install 'ExploreModelMatrix' in R:
install.packages('ExploreModelMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/csoneson/exploremodelmatrix/issues

On BioConductor:ExploreModelMatrix-1.25.0(bioc 3.24)ExploreModelMatrix-1.24.0(bioc 3.23)

experimentaldesignregressiondifferentialexpressionshinyapps

7.51 score 38 stars 106 scripts 528 downloads 2 mentions 2 exports 72 dependencies

Last updated from:384a0c2d9a. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE168
linux-devel-x86_64OK210
source / vignettesOK284
linux-release-x86_64OK238
macos-release-arm64OK120
macos-oldrel-arm64OK112
windows-develOK147
windows-releaseOK138
windows-oldrelOK134
wasm-releaseOK127

Exports:ExploreModelMatrixVisualizeDesign

Dependencies:base64encBiocGenericsbslibcachemclicommonmarkcowplotcpp11crosstalkdigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlazyevallifecyclelimmamagrittrMASSmemoisemimeotelpillarpkgconfigpromisespurrrR6rappdirsRColorBrewerRcpprintrojsrlangrmarkdownS4VectorsS7sassscalesshinyshinydashboardshinyjssourcetoolsstatmodstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml

Interactive exploration of design matrices with ExploreModelMatrix
Introduction | Interface | Examples | Example 1 | Example 2 | Example 3 | Exporting data from the app | Session info

Last update: 2024-03-02
Started: 2020-03-27

Deploying ExploreModelMatrix on a Shiny Server
Why deploying ExploreModelMatrix on a Shiny server? | How to deploy ExploreModelMatrix | Step 1: Setting up the Shiny Server | Step 2: setup ExploreModelMatrix | Installing ExploreModelMatrix | Setup ExploreModelMatrix on the server | ExploreModelMatrix at the IMBEI | Session info

Last update: 2020-06-14
Started: 2020-04-19

Readme and manuals

Help Manual

Help pageTopics
Explore model matrixExploreModelMatrix
Visualize design matrixVisualizeDesign