Package: ExiMiR 2.55.0

Sylvain Gubian

ExiMiR: R functions for the normalization of Exiqon miRNA array data

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Authors:Sylvain Gubian <[email protected]>, Alain Sewer <[email protected]>, PMP SA

ExiMiR_2.55.0.tar.gz
ExiMiR_2.55.0.zip(r-4.7)ExiMiR_2.55.0.zip(r-4.6)ExiMiR_2.55.0.zip(r-4.5)
ExiMiR_2.55.0.tgz(r-4.6-any)ExiMiR_2.55.0.tgz(r-4.5-any)
ExiMiR_2.55.0.tar.gz(r-4.7-any)ExiMiR_2.55.0.tar.gz(r-4.6-any)
ExiMiR_2.55.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ExiMiR/json (API)
NEWS

# Install 'ExiMiR' in R:
install.packages('ExiMiR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • galenv - R annotation environment for GEO series GSE20122
  • GSE19183 - Affybatch object for the raw data from GEO series GSE19183
  • GSE20122 - Affybatch object for the raw data from GEO series GSE20122

On BioConductor:ExiMiR-2.55.0(bioc 3.24)ExiMiR-2.54.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayonechanneltwochannelpreprocessinggeneexpressiontranscription

3.78 score 8 scripts 451 downloads 3 mentions 12 exports 9 dependencies

Last updated from:271382b0d3. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR183
linux-devel-x86_64NOTE178
source / vignettesOK238
linux-release-x86_64NOTE169
macos-release-arm64NOTE99
macos-oldrel-arm64NOTE114
windows-develNOTE473
windows-releaseNOTE455
windows-oldrelNOTE452
wasm-releaseOK133

Exports:bg.correct.miRcreateABmake.gal.envnorm.miRNormiRNormiR.bgcorrect.methodsNormiR.normalize.methodsNormiR.pmcorrect.methodsNormiR.spikein.argsNormiR.summary.methodsReadExisummarize.miR

Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericslimmapreprocessCorestatmod

Description of ExiMiR

Rendered fromExiMiR-vignette.Rnwusingutils::Sweaveon Jun 02 2026.

Last update: 2020-04-13
Started: 2013-11-01