Package: EnrichmentBrowser 2.37.0
EnrichmentBrowser: Seamless navigation through combined results of set-based and network-based enrichment analysis
The EnrichmentBrowser package implements essential functionality for the enrichment analysis of gene expression data. The analysis combines the advantages of set-based and network-based enrichment analysis in order to derive high-confidence gene sets and biological pathways that are differentially regulated in the expression data under investigation. Besides, the package facilitates the visualization and exploration of such sets and pathways.
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EnrichmentBrowser_2.37.0.tar.gz
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EnrichmentBrowser.pdf |EnrichmentBrowser.html✨
EnrichmentBrowser/json (API)
NEWS
# Install 'EnrichmentBrowser' in R: |
install.packages('EnrichmentBrowser', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lgeistlinger/enrichmentbrowser/issues
On BioConductor:EnrichmentBrowser-2.37.0(bioc 3.21)EnrichmentBrowser-2.36.0(bioc 3.20)
immunooncologymicroarrayrnaseqgeneexpressiondifferentialexpressionpathwaysgraphandnetworknetworkgenesetenrichmentnetworkenrichmentvisualizationreportwriting
Last updated 2 months agofrom:0601e6c423. Checks:OK: 1 NOTE: 3 ERROR: 3. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 18 2024 |
R-4.5-win | ERROR | Dec 18 2024 |
R-4.5-linux | NOTE | Dec 18 2024 |
R-4.4-win | ERROR | Dec 18 2024 |
R-4.4-mac | ERROR | Dec 18 2024 |
R-4.3-win | NOTE | Dec 18 2024 |
R-4.3-mac | NOTE | Dec 18 2024 |
Exports:combResultscompileGRNconfigEBrowserdeAnadownloadPathwayseaBrowseebrowserexprsHeatmapgetGenesetsggeaGraphggeaGraphLegendgsRankingidMapidTypesimportisAvailablemakeExampleDatanbeanbeaMethodsnormalizepdistrprobe2genereadSEsbeasbeaMethodsshowAvailableCollectionsshowAvailableSpeciesvolcanowriteGMT
Dependencies:abindannotateAnnotationDbiaskpassBiobaseBiocFileCacheBiocGenericsBiocManagerBiostringsbitbit64bitopsblobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyredgeRfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueGO.dbgraphgraphiteGSEABasehttrhwriterIRangesjsonliteKEGGgraphKEGGRESTlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslorg.Hs.eg.dbpathviewpillarpkgconfigplogrpngpurrrR6rappdirsRCurlRgraphvizrlangRSQLiteS4ArraysS4VectorssafeSparseArraySparseMSPIAstatmodstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLxtableXVectorzlibbioc