Package: EnrichmentBrowser 2.35.1
EnrichmentBrowser: Seamless navigation through combined results of set-based and network-based enrichment analysis
The EnrichmentBrowser package implements essential functionality for the enrichment analysis of gene expression data. The analysis combines the advantages of set-based and network-based enrichment analysis in order to derive high-confidence gene sets and biological pathways that are differentially regulated in the expression data under investigation. Besides, the package facilitates the visualization and exploration of such sets and pathways.
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EnrichmentBrowser_2.35.1.tar.gz
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EnrichmentBrowser.pdf |EnrichmentBrowser.html✨
EnrichmentBrowser/json (API)
NEWS
# Install 'EnrichmentBrowser' in R: |
install.packages('EnrichmentBrowser', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lgeistlinger/enrichmentbrowser/issues
On BioConductor:EnrichmentBrowser-2.35.1(bioc 3.20)EnrichmentBrowser-2.34.1(bioc 3.19)
Last updated 2 months agofrom:2f98d2d626
Exports:combResultscompileGRNconfigEBrowserdeAnadownloadPathwayseaBrowseebrowserexprsHeatmapgetGenesetsggeaGraphggeaGraphLegendgsRankingidMapidTypesimportisAvailablemakeExampleDatanbeanbeaMethodsnormalizepdistrprobe2genereadSEsbeasbeaMethodsshowAvailableCollectionsshowAvailableSpeciesvolcanowriteGMT
Dependencies:abindannotateAnnotationDbiaskpassBiobaseBiocFileCacheBiocGenericsBiocManagerBiostringsbitbit64bitopsblobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyredgeRfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueGO.dbgraphgraphiteGSEABasehttrhwriterIRangesjsonliteKEGGgraphKEGGRESTlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslorg.Hs.eg.dbpathviewpillarpkgconfigplogrpngpurrrR6rappdirsRcppRCurlRgraphvizrlangRSQLiteS4ArraysS4VectorssafeSparseArraySparseMSPIAstatmodstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXMLxtableXVectorzlibbioc