Package: EmpiricalBrownsMethod 1.41.0

David Gibbs
EmpiricalBrownsMethod: Uses Brown's method to combine p-values from dependent tests
Combining P-values from multiple statistical tests is common in bioinformatics. However, this procedure is non-trivial for dependent P-values. This package implements an empirical adaptation of Brown’s Method (an extension of Fisher’s Method) for combining dependent P-values which is appropriate for highly correlated data sets found in high-throughput biological experiments.
Authors:
EmpiricalBrownsMethod_1.41.0.tar.gz
EmpiricalBrownsMethod_1.41.0.zip(r-4.7)EmpiricalBrownsMethod_1.41.0.zip(r-4.6)EmpiricalBrownsMethod_1.41.0.zip(r-4.5)
EmpiricalBrownsMethod_1.41.0.tgz(r-4.6-any)EmpiricalBrownsMethod_1.41.0.tgz(r-4.5-any)
EmpiricalBrownsMethod_1.41.0.tar.gz(r-4.7-any)EmpiricalBrownsMethod_1.41.0.tar.gz(r-4.6-any)
EmpiricalBrownsMethod_1.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
EmpiricalBrownsMethod/json (API)
NEWS
| # Install 'EmpiricalBrownsMethod' in R: |
| install.packages('EmpiricalBrownsMethod', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ilyalab/combiningdependentpvaluesusingebm/issues
On BioConductor:EmpiricalBrownsMethod-1.41.0(bioc 3.24)EmpiricalBrownsMethod-1.40.0(bioc 3.23)
statisticalmethodgeneexpressionpathways
Last updated from:fadc1da645. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 144 | ||
| linux-devel-x86_64 | NOTE | 145 | ||
| source / vignettes | OK | 148 | ||
| linux-release-x86_64 | NOTE | 141 | ||
| macos-release-arm64 | NOTE | 69 | ||
| macos-oldrel-arm64 | NOTE | 111 | ||
| windows-devel | NOTE | 79 | ||
| windows-release | NOTE | 77 | ||
| windows-oldrel | NOTE | 68 | ||
| wasm-release | OK | 91 |
Exports:empiricalBrownsMethodkostsMethod
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Data used in tests and examples. | allPvals dat ebmTestData pathways randData |
| The Empirical Browns Method For Combining P-values | empiricalBrownsMethod |
| The Kost Method For Combining P-values | kostsMethod |