Package: ERSSA 1.31.0
Zixuan Shao
ERSSA: Empirical RNA-seq Sample Size Analysis
The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.
Authors:
ERSSA_1.31.0.tar.gz
ERSSA_1.31.0.zip(r-4.7)ERSSA_1.31.0.zip(r-4.6)ERSSA_1.31.0.zip(r-4.5)
ERSSA_1.31.0.tgz(r-4.6-any)ERSSA_1.31.0.tgz(r-4.5-any)
ERSSA_1.31.0.tar.gz(r-4.7-any)ERSSA_1.31.0.tar.gz(r-4.6-any)
ERSSA_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ERSSA/json (API)
NEWS
| # Install 'ERSSA' in R: |
| install.packages('ERSSA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zshao1/erssa/issues
- combinations.partial - Example list of combinations generated by comb_gen function.
- condition_table.full - Example table of sample names and conditions
- condition_table.partial - Example table of sample names and conditions
- count_table.filtered.partial - Example count table of GTEx RNA-seq experiment, fitered by count_filter function
- count_table.full - Example count table of GTEx RNA-seq experiment
- count_table.partial - Example count table of GTEx RNA-seq experiment
- deg.partial - Example list of DE genes generated by edgeR
On BioConductor:ERSSA-1.31.0(bioc 3.24)ERSSA-1.30.0(bioc 3.23)
immunooncologygeneexpressiontranscriptiondifferentialexpressionrnaseqmultiplecomparisonqualitycontrol
Last updated from:40734a208c. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 178 | ||
| linux-devel-x86_64 | NOTE | 402 | ||
| source / vignettes | OK | 256 | ||
| linux-release-x86_64 | NOTE | 338 | ||
| macos-release-arm64 | NOTE | 298 | ||
| macos-oldrel-arm64 | NOTE | 190 | ||
| windows-devel | NOTE | 284 | ||
| windows-release | NOTE | 271 | ||
| windows-oldrel | NOTE | 270 | ||
| wasm-release | OK | 139 |
Exports:comb_gencount_filtererssaerssa_deseq2erssa_deseq2_parallelerssa_edgererssa_edger_parallelggplot2_dotplotggplot2_intersectPlotggplot2_marginPlotggplot2_TPR_FPRPlot
Dependencies:abindapeglmbbmlebdsmatrixBHBiobaseBiocGenericsBiocParallelclicodacodetoolscpp11DelayedArrayDESeq2edgeRemdbookfarverformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtableIRangesisobandlabelinglambda.rlatticelifecyclelimmalocfitMASSMatrixMatrixGenericsmatrixStatsmvtnormnumDerivplyrR6RColorBrewerRcppRcppArmadilloRcppEigenRcppNumericalrlangS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystatmodSummarizedExperimentvctrsviridisLitewithrXVector
