Package: EBcoexpress 1.49.0
John A. Dawson
EBcoexpress: EBcoexpress for Differential Co-Expression Analysis
An Empirical Bayesian Approach to Differential Co-Expression Analysis at the Gene-Pair Level
Authors:
EBcoexpress_1.49.0.tar.gz
EBcoexpress_1.49.0.zip(r-4.5)EBcoexpress_1.49.0.zip(r-4.4)EBcoexpress_1.49.0.zip(r-4.3)
EBcoexpress_1.49.0.tgz(r-4.4-arm64)EBcoexpress_1.49.0.tgz(r-4.4-x86_64)EBcoexpress_1.49.0.tgz(r-4.3-arm64)EBcoexpress_1.49.0.tgz(r-4.3-x86_64)
EBcoexpress_1.49.0.tar.gz(r-4.5-noble)EBcoexpress_1.49.0.tar.gz(r-4.4-noble)
EBcoexpress_1.49.0.tgz(r-4.4-emscripten)EBcoexpress_1.49.0.tgz(r-4.3-emscripten)
EBcoexpress.pdf |EBcoexpress.html✨
EBcoexpress/json (API)
| # Install 'EBcoexpress' in R: |
| install.packages('EBcoexpress', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- fiftyGenes - The fiftyGenes expression matrix
On BioConductor:EBcoexpress-1.49.0(bioc 3.20)EBcoexpress-1.48.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:52db3d899b
Exports:bwmccrit.funebCoexpressFullTCAECMebCoexpressMetaebCoexpressOneStepebCoexpressZeroStepinitializeHPmakeMyDpriorDiagnosticrankMyGenesshowNetworkshowPair
Dependencies:BiobaseBiocGenericsclusterEBarrayslatticemclustminqaRcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A function for DC meta-analysis that combines individual study analyses | ebCoexpressMeta |
| Functions to run single-study analyses | ebCoexpressFullTCAECM ebCoexpressOneStep ebCoexpressZeroStep |
| The fiftyGenes expression matrix | fiftyGenes |
| Initializing Hyperparameters for EM | initializeHP |
| A function to convert the X expression matrix into the D correlation matrix | makeMyD |
| Visual diagnostic for the EBcoexpress prior | priorDiagnostic |
| A function to rank the genes by the number of DC pairs in which they appear | rankMyGenes |
| A function for looking at the co-expression among a small group of genes | showNetwork |
| A function for looking at a pair's differential co-expression | showPair |
| Basic utilities for the EBcoexpress package | bwmc crit.fun |