Package: EBSEA 1.35.0

Arfa Mehmood

EBSEA: Exon Based Strategy for Expression Analysis of genes

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Authors:Arfa Mehmood, Asta Laiho, Laura L. Elo

EBSEA_1.35.0.tar.gz
EBSEA_1.35.0.zip(r-4.5)EBSEA_1.35.0.zip(r-4.4)EBSEA_1.35.0.zip(r-4.3)
EBSEA_1.35.0.tgz(r-4.4-any)EBSEA_1.35.0.tgz(r-4.3-any)
EBSEA_1.35.0.tar.gz(r-4.5-noble)EBSEA_1.35.0.tar.gz(r-4.4-noble)
EBSEA_1.35.0.tgz(r-4.4-emscripten)EBSEA_1.35.0.tgz(r-4.3-emscripten)
EBSEA.pdf |EBSEA.html✨
EBSEA/json (API)

# Install 'EBSEA' in R:

install.packages('EBSEA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

exonCounts - Subset of Pasilla Dataset

On BioConductor:EBSEA-1.35.0(bioc 3.21)EBSEA-1.34.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software differentialexpression geneexpression sequencing

3.30 score 4 scripts 172 downloads 3 exports 68 dependencies

Last updated 2 months agofrom:be7ea149d8. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 29 2024
R-4.5-win	OK	Nov 29 2024
R-4.5-linux	OK	Nov 29 2024
R-4.4-win	OK	Nov 29 2024
R-4.4-mac	OK	Nov 29 2024
R-4.3-win	OK	Nov 29 2024
R-4.3-mac	OK	Nov 29 2024

Exports:EBSEA filterCounts visualizeGenes

Dependencies:abind askpass BH Biobase BiocGenerics BiocParallel cli codetools colorspace cpp11 crayon curl DelayedArray DESeq2 EmpiricalBrownsMethod fansi farver formatR futile.logger futile.options generics GenomeInfoDb GenomeInfoDbData GenomicRanges ggplot2 glue gtable httr IRanges isoband jsonlite labeling lambda.r lattice lifecycle locfit magrittr MASS Matrix MatrixGenerics matrixStats mgcv mime munsell nlme openssl pillar pkgconfig R6 RColorBrewer Rcpp RcppArmadillo rlang S4Arrays S4Vectors scales snow SparseArray SummarizedExperiment sys tibble UCSC.utils utf8 vctrs viridisLite withr XVector zlibbioc

EBSEA: Exon Based Strategy for Expression Analysis of genes

Arfa Mehmood

Rendered fromEBSEA.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2020-10-18
Started: 2020-10-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Exon Based Startegy for Expression Analysis of genes	EBSEA
Subset of Pasilla Dataset	exonCounts
Filter Count Data	filterCounts
Visualize gene	visualizeGenes

Usage by other packages (reverse dependencies)