Package: EBSEA 1.33.0
Arfa Mehmood
EBSEA: Exon Based Strategy for Expression Analysis of genes
Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.
Authors:
EBSEA_1.33.0.tar.gz
EBSEA_1.33.0.zip(r-4.5)EBSEA_1.33.0.zip(r-4.4)EBSEA_1.33.0.zip(r-4.3)
EBSEA_1.33.0.tgz(r-4.4-any)EBSEA_1.33.0.tgz(r-4.3-any)
EBSEA_1.33.0.tar.gz(r-4.5-noble)EBSEA_1.33.0.tar.gz(r-4.4-noble)
EBSEA_1.33.0.tgz(r-4.4-emscripten)EBSEA_1.33.0.tgz(r-4.3-emscripten)
EBSEA.pdf |EBSEA.html✨
EBSEA/json (API)
| # Install 'EBSEA' in R: |
| install.packages('EBSEA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- exonCounts - Subset of Pasilla Dataset
On BioConductor:EBSEA-1.33.0(bioc 3.20)EBSEA-1.32.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:4ae5ff76e5
Exports:EBSEAfilterCountsvisualizeGenes
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelclicodetoolscolorspacecpp11crayoncurlDelayedArrayDESeq2EmpiricalBrownsMethodfansifarverformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigR6RColorBrewerRcppRcppArmadillorlangS4ArraysS4VectorsscalessnowSparseArraySummarizedExperimentsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Exon Based Startegy for Expression Analysis of genes | EBSEA |
| Subset of Pasilla Dataset | exonCounts |
| Filter Count Data | filterCounts |
| Visualize gene | visualizeGenes |
