Package: DiscoRhythm 1.29.0

Matthew Carlucci

DiscoRhythm: Interactive Workflow for Discovering Rhythmicity in Biological Data

Set of functions for estimation of cyclical characteristics, such as period, phase, amplitude, and statistical significance in large temporal datasets. Supporting functions are available for quality control, dimensionality reduction, spectral analysis, and analysis of experimental replicates. Contains a R Shiny web interface to execute all workflow steps.

Authors:Matthew Carlucci [aut, cre], Algimantas Kriščiūnas [aut], Haohan Li [aut], Povilas Gibas [aut], Karolis Koncevičius [aut], Art Petronis [aut], Gabriel Oh [aut]

DiscoRhythm_1.29.0.tar.gz
DiscoRhythm_1.29.0.zip(r-4.7)DiscoRhythm_1.29.0.zip(r-4.6)DiscoRhythm_1.29.0.zip(r-4.5)
DiscoRhythm_1.29.0.tgz(r-4.6-any)DiscoRhythm_1.29.0.tgz(r-4.5-any)
DiscoRhythm_1.29.0.tar.gz(r-4.7-any)DiscoRhythm_1.29.0.tar.gz(r-4.6-any)
DiscoRhythm_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DiscoRhythm/json (API)
NEWS

# Install 'DiscoRhythm' in R:
install.packages('DiscoRhythm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/matthewcarlucci/discorhythm/issues

Datasets:

On BioConductor:DiscoRhythm-1.29.0(bioc 3.24)DiscoRhythm-1.28.0(bioc 3.23)

softwaretimecoursequalitycontrolvisualizationguiprincipalcomponentbioconductordata-visualizationoscillationsrhythm-detectionwebapp

6.21 score 13 stars 21 scripts 377 downloads 2 mentions 15 exports 146 dependencies

Last updated from:1fc87d9baf. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE201
linux-devel-x86_64NOTE327
source / vignettesOK268
linux-release-x86_64NOTE331
macos-release-arm64NOTE340
macos-oldrel-arm64NOTE194
windows-develNOTE259
windows-releaseNOTE277
windows-oldrelNOTE245
wasm-releaseOK162

Exports:discoAppdiscoBatchdiscoCheckInputdiscoDesignSummarydiscoDFtoSEdiscoGetODAsdiscoGetSimudiscoInterCorOutliersdiscoODAsdiscoParseMetadiscoPCAdiscoPCAoutliersdiscoPeriodDetectiondiscoRepAnalysisdiscoSEtoDF

Dependencies:abindaskpassassertthatbackportsbase64encBiobaseBiocGenericsBiocManagerBiocStylebookdownbroombslibcacachemcallrcliclustercodetoolscolorspacecolourpickercommonmarkcpp11crosstalkcurldata.tableDelayedArraydendextenddigestdplyrDTeggevaluatefarverfastmapfontawesomeforeachformatRfsfutile.loggerfutile.optionsgclusgenericsGenomicRangesggExtraggplot2gluegnmgridExtragtableheatmaplyhighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonlitekableExtraknitrlabelinglambda.rlaterlatticelazyevallifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmatrixTestsmemoiseMetaCyclemgcvmimeminiUInlmennetopensslotelpermutepillarpkgconfigplotlyplyrprocessxpromisespspurrrqapqvcalcR6rappdirsRColorBrewerRcppregistryrelimpreshape2rlangrmarkdownrstudioapiS4ArraysS4VectorsS7sassscalesSeqinfoseriationshinyshinyBSshinycssloadersshinydashboardshinyjssourcetoolsSparseArraystringistringrSummarizedExperimentsvglitesyssystemfontstextshapingtibbletidyrtidyselecttinytexTSPUpSetRutf8vctrsveganVennDiagramviridisviridisLitewebshotwithrxfunxml2xtableXVectoryamlzip

Introduction to r BiocStyle::Biocpkg('DiscoRhythm')

Matthew Carlucci, Algimantas Kriščiūnas, Haohan Li, Povilas Gibas, Karolis Koncevičius, Art Petronis, Gabriel Oh

Rendered fromdisco_workflow_vignette.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2020-09-29
Started: 2019-04-05